Miyakogusa Predicted Gene

Lj1g3v0984440.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL H8WVC6_LOTJA 662 97.5 97.5 (tr|H8WVC6) E3 ubiquitin ligase OS=Lotus japonicus GN=SINA4 PE=2 SV=1
TAIR_pep AT3G61790.1 564 83.4 87.1 | Symbols: | Protein with RING/U-box and TRAF-like domains | chr3:22871974-22873543 REVERSE LENGTH=326
Medicago Medtr1g008120.1 615 90.1 91.3 | ubiquitin ligase SINAT3 | HC | chr1:732376-737785 | 20130731
Soybean Glyma06g13440.1 631 92.7 94.8  
LJGI gnl|LJGI|TC68066 1925 99.9 99.9 homologue to UniRef100_A8W463 Cluster: SINA4; n=1; Medicago truncatula|Rep: SINA4 - Medicago truncatula (Barrel medic), complete
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0984440.1 length: 324 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS50089 ZF_RING_2 0.0 62-98
IPR004162 Seven-in-absentia protein, sina
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPanther PTHR10315 PTHR10315 0.0 34-320
IPR008974 TRAF-like
Molecular Function GO:0005515 protein binding    
superfamily SSF49599 Traf_like 8.300014037915944E-52 115-307
IPR013010 Zinc finger, SIAH-type
Molecular Function GO:0008270 zinc ion binding    
ProfileScan PS51081 ZF_SIAH 0.0 115-175
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10G3DSA:3.30.40.10 T[43-127] 5.1999999995833344E-11  
IPR013323 SIAH-type domain
Molecular Function GO:0004842 ubiquitin-protein ligase activity    
Molecular Function GO:0008270 zinc ion binding    
Biological Process GO:0016567 protein ubiquitination    
Gene3D G3DSA:3.90.890.10G3DSA:3.90.890.10 T[128-170] 3.899999999762035E-21  
IPR018121 Seven-in-absentia protein, TRAF-like domain
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006511 ubiquitin-dependent protein catabolic process    
Biological Process GO:0007275 multicellular organismal development    
HMMPfam PF03145 Sina 5.20000000000001E-74 104-303
no_ID  
Gene3D G3DSA:2.60.210.10G3DSA:2.60.210.10 T[180-307] 7.399999999472192E-60  
superfamily SSF57850 SSF57850 2.5000008644594197E-7 54-110
Wolf-PSORT
Lj1g3v0984440.1	nucl 5, cyto 4, cysk_nucl 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0984440.1