Miyakogusa Predicted Gene
- Lj1g3v0984420.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1M6H2_SOYBN |
547 |
77.7 |
86.7 |
(tr|I1M6H2) Uncharacterized protein OS=Glycine max PE=3 SV=2 |
| TAIR_pep |
AT5G55590.1 |
416 |
58.0 |
74.4 |
| Symbols: QRT1 | Pectin lyase-like superfamily protein | chr5:22519911-22521699 FORWARD LENGTH=380 |
| Medicago |
Medtr5g095490.1 |
525 |
75.1 |
86.1 |
| pectinesterase | HC | chr5:41736379-41738796 | 20130731 |
| Soybean |
Glyma14g01820.1 |
547 |
77.7 |
86.7 |
|
| LJGI |
gnl|LJGI|GO015023 |
1294 |
97.3 |
97.3 |
weakly similar to UniRef100_A9STS3 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (41%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0984420.1 |
length: 358 aa. |
| IPR000070 |
Pectinesterase, catalytic |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005618 |
cell wall |
|
|
| Molecular Function |
GO:0030599 |
pectinesterase activity |
|
|
| Biological Process |
GO:0042545 |
cell wall modification |
|
|
| HMMPfam |
PF01095 |
Pectinesterase |
8.3e-71 |
59-353 |
| IPR011050 |
Pectin lyase fold/virulence factor |
| superfamily |
SSF51126 |
Pectin |
2.5e-77 |
51-356 |
| IPR012334 |
Pectin lyase fold |
| Gene3D |
G3DSA:2.160.20.10 |
no description |
9e-105 |
58-356 |
| no_ID |
|
| HMMPanther |
PTHR31321 |
FAMILY |
5.2e-144 |
57-357 |
| HMMPanther |
PTHR31321:SF0 |
SUBFAMILY |
5.2e-144 |
57-357 |
| Seg |
seg |
seg |
NA |
3-13 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
2 |
24 |
- Wolf-PSORT
Lj1g3v0984420.1 vacu 7, cyto 2, chlo 1, mito 1, extr 1, E.R. 1, golg 1, cyto_nucl 1, chlo_mito 1, cyto_pero 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0984420.1 |
|