Miyakogusa Predicted Gene

Lj1g3v0912010.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL M5W3X4_PRUPE 773 58.9 76.3 (tr|M5W3X4) Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa014901mg PE=4 SV=1
TAIR_pep AT1G43980.1 578 46.3 67.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:16687637-16689502 REVERSE LENGTH=621
Medicago Medtr3g088835.1 1012 77.3 85.9 | PPR containing plant-like protein | HC | chr3:40655233-40657665 | 20130731
Soybean Glyma06g12590.1 1022 78.9 87.0  
LJGI gnl|LJGI|FS352951 926 99.4 99.4 weakly similar to UniRef100_A7NSP8 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0912010.1 length: 629 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00029 83-110
184-209
212-239
315-336
414-443
HMMPfam PF13041 PPR_2 1.5e-12 111-153
HMMPfam PF13812 PPR_3 0.3 485-511
HMMTigr TIGR00756 PPR: 3.3e-05 83-112
113-146
414-447
ProfileScan PS51375 PPR 6.029 111-145
80-110
49-79
210-244
179-209
245-279
311-345
280-310
412-446
381-411
447-482
483-513
549-579
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 0.00067 506-568
no_ID  
HMMPanther PTHR24015 FAMILY 2.8e-163 91-629
HMMPanther PTHR24015:SF31 SUBFAMILY 2.8e-163 91-629
Seg seg seg NA 612-619
Wolf-PSORT
Lj1g3v0912010.1	chlo 12, cyto 1, mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0912010.1