Miyakogusa Predicted Gene

Lj1g3v0874380.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KAE0_SOYBN 1166 70.8 79.0 (tr|I1KAE0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G21650.3 637 42.5 60.6 | Symbols: SECA2 | Preprotein translocase SecA family protein | chr1:7592891-7604152 REVERSE LENGTH=1805
Medicago Medtr3g088535.1 677 62.1 72.1 | preprotein translocase SecA family protein, putative | HC | chr3:40247544-40249238 | 20130731
Soybean Glyma06g12310.2 1166 70.8 79.0  
LJGI gnl|LJGI|BW616800 916 99.4 99.4 similar to UniRef100_Q9XI13 Cluster: F8K7.7 protein; n=1; Arabidopsis thaliana|Rep: F8K7.7 protein - Arabidopsis thaliana (Mouse-ear cress), partial (7%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0874380.1 length: 835 aa.
IPR001680 WD40 repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 3.3e-07 541-575
582-617
640-666
672-706
HMMSmart SM00320 WD40 60 538-575
578-618
624-666
669-706
709-750
797-833
ProfileScan PS50082 WD_REPEATS_2 12.146 545-584
676-715
IPR001841 Zinc finger, RING-type
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 2.6e-08 5-51
HMMSmart SM00184 Ring 5.6e-08 6-50
ProfileScan PS50089 ZF_RING_2 12.563 6-51
IPR011009 Protein kinase-like domain
Molecular Function GO:0016772 transferase activity, transferring phosphorus-containing groups    
superfamily SSF56112 Protein 7.5e-09 196-475
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 2.8e-12 4-60
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 1.7e-44 536-833
IPR017907 Zinc finger, RING-type, conserved site
PatternScan PS00518 ZF_RING_1 NA 25-34
IPR017986 WD40-repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50294 WD_REPEATS_REGION 25.576 545-759
superfamily SSF50978 WD40 1.3e-50 536-833
IPR020472 G-protein beta WD-40 repeat
FPrintScan PR00320 GPROTEINBRPT 6.1e-06 562-576
653-667
693-707
no_ID  
Coil coil coiled-coil NA 309-338
Gene3D G3DSA:1.10.510.10 no description 8e-06 344-465
HMMPanther PTHR22844 F-BOX 2e-48 542-833
Seg seg seg NA 68-79
314-332
superfamily SSF57850 RING/U-box 8.5e-13 1-58
Putative transmembrane regions
  From To
TM segments
SOSUI		 138 160
170 192
201 223
252 274
373 395
Wolf-PSORT
Lj1g3v0874380.1	plas 6, E.R. 3, cysk_plas 3, mito_plas 3, cyto_plas 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0874380.1