Miyakogusa Predicted Gene

Lj1g3v0874360.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KUJ8_SOYBN 809 79.4 89.0 (tr|K7KUJ8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G77360.1 709 67.7 83.8 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:29071983-29073536 REVERSE LENGTH=517
Medicago Medtr3g088505.3 853 83.6 91.7 | PPR containing plant-like protein | HC | chr3:40228600-40232128 | 20130731
Soybean Glyma06g12290.1 789 80.9 89.8  
LJGI gnl|LJGI|AV422239 767 100.0 100.0 similar to UniRef100_A7NVH9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (31%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0874360.1 length: 481 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00092 134-160
273-302
HMMPfam PF12854 PPR_1 3e-13 231-262
HMMPfam PF13041 PPR_2 1.4e-14 166-211
305-351
373-422
HMMTigr TIGR00756 PPR: 1e-08 134-163
169-195
203-236
237-270
273-306
307-340
343-369
377-409
411-444
ProfileScan PS51375 PPR 12.288 166-196
131-165
97-127
200-234
235-269
305-339
270-304
374-408
340-370
409-443
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 1e-07 272-399
no_ID  
HMMPanther PTHR24015 FAMILY 1.7e-129 54-469
HMMPanther PTHR24015:SF0 SUBFAMILY 1.7e-129 54-469
superfamily SSF81901 HCP-like 9.3e-06 169-399
Wolf-PSORT
Lj1g3v0874360.1	chlo 4, cyto 4, mito 2, plas 2, cyto_nucl 2, cyto_pero 2, mito_plas 2, cyto_E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0874360.1