Miyakogusa Predicted Gene
- Lj1g3v0862930.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7KM59_SOYBN |
448 |
81.7 |
88.9 |
(tr|K7KM59) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G21700.1 |
261 |
63.6 |
77.8 |
| Symbols: ATSWI3C, CHB4, SWI3C | SWITCH/sucrose nonfermenting 3C | chr1:7620156-7623978 REVERSE LENGTH=807 |
| Medicago |
Medtr3g088480.1 |
434 |
79.2 |
85.6 |
| SWI/SNF complex protein | HC | chr3:40113660-40120664 | 20130731 |
| Soybean |
Glyma14g24290.1 |
394 |
72.3 |
82.2 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0862930.2 |
length: 264 aa. |
| IPR001005 |
SANT/Myb domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003682 |
chromatin binding |
|
|
| HMMPfam |
PF00249 |
Myb_DNA-binding |
1.5e-09 |
79-120 |
| HMMSmart |
SM00717 |
SANT |
3.3e-11 |
76-124 |
| IPR009057 |
Homeodomain-like |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Gene3D |
G3DSA:1.10.10.60 |
no description |
4.8e-07 |
78-118 |
| superfamily |
SSF46689 |
Homeodomain-like |
5.2e-13 |
70-138 |
| IPR017884 |
SANT domain |
| ProfileScan |
PS51293 |
SANT |
21.684 |
75-126 |
| no_ID |
|
| HMMPanther |
PTHR12802 |
SWI/SNF |
1.8e-94 |
3-210 |
| HMMPanther |
PTHR12802:SF4 |
SWI/SNF |
1.8e-94 |
3-210 |
| Seg |
seg |
seg |
NA |
197-210 |
- Wolf-PSORT
Lj1g3v0862930.2 nucl 8, cyto 4, cysk_nucl 4, nucl_plas 4
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0862930.2 |
|