Miyakogusa Predicted Gene

Lj1g3v0765580.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LCM4_SOYBN 619 71.5 78.0 (tr|I1LCM4) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G10490.2 333 44.8 56.3 | Symbols: ANAC052, NAC052 | NAC domain containing protein 52 | chr3:3268075-3270608 FORWARD LENGTH=451

Medicago Medtr1g090720.1 561 67.2 72.4 | NAC transcription factor-like protein | HC | chr1:40728357-40734069 | 20130731

Soybean Glyma10g34130.1 619 71.5 78.0

LJGI gnl|LJGI|TC73491 1255 99.5 99.5 similar to UniRef100_Q8LRM1 Cluster: Nam-like protein 4; n=1; Petunia x hybrida|Rep: Nam-like protein 4 - Petunia hybrida (Petunia), partial (45%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0765580.1 length: 474 aa.

IPR003441 No apical meristem (NAM) protein

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Biological Process GO:0006355 regulation of transcription, DNA-dependent

HMMPfam PF02365 NAM 1.5e-50 50-177

ProfileScan PS51005 NAC 58.144 50-204

superfamily SSF101941 NAC 3.1e-60 34-205

no_ID

Coil coil coiled-coil NA 422-443
450-471

HMMPanther PTHR31989 FAMILY 2.2e-111 38-232

HMMPanther PTHR31989:SF0 SUBFAMILY 2.2e-111 38-232

Seg seg seg NA 10-52
358-380
385-402

Wolf-PSORT

Lj1g3v0765580.1 chlo 11, nucl 2

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0765580.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LCM4_SOYBN	619	71.5	78.0	(tr\|I1LCM4) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G10490.2	333	44.8	56.3	\| Symbols: ANAC052, NAC052 \| NAC domain containing protein 52 \| chr3:3268075-3270608 FORWARD LENGTH=451
Medicago	Medtr1g090720.1	561	67.2	72.4	\| NAC transcription factor-like protein \| HC \| chr1:40728357-40734069 \| 20130731
Soybean	Glyma10g34130.1	619	71.5	78.0
LJGI	gnl\|LJGI\|TC73491	1255	99.5	99.5	similar to UniRef100_Q8LRM1 Cluster: Nam-like protein 4; n=1; Petunia x hybrida\|Rep: Nam-like protein 4 - Petunia hybrida (Petunia), partial (45%)

IPR003441	No apical meristem (NAM) protein
Lj1g3v0765580.1				length: 474 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Biological Process	GO:0006355	regulation of transcription, DNA-dependent
HMMPfam	PF02365	NAM	1.5e-50	50-177
ProfileScan	PS51005	NAC	58.144	50-204
superfamily	SSF101941	NAC	3.1e-60	34-205
no_ID
Coil	coil	coiled-coil	NA	422-443 450-471
HMMPanther	PTHR31989	FAMILY	2.2e-111	38-232
HMMPanther	PTHR31989:SF0	SUBFAMILY	2.2e-111	38-232
Seg	seg	seg	NA	10-52 358-380 385-402