Miyakogusa Predicted Gene

Lj1g3v0762230.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SUX8_LOTJA 314 100.0 100.0 (tr|I3SUX8) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT5G14320.1 228 72.1 82.5 | Symbols: | Ribosomal protein S13/S18 family | chr5:4617839-4618772 REVERSE LENGTH=169
Medicago Medtr3g073140.1 261 83.0 90.8 | 30S ribosomal protein S13 | HC | chr3:32955385-32954404 | 20130731
Soybean Glyma06g11450.1 266 85.4 90.1  
LJGI gnl|LJGI|TC61679 981 100.0 100.0 similar to UniRef100_P42732 Cluster: 30S ribosomal protein S13, chloroplast precursor; n=1; Arabidopsis thaliana|Rep: 30S ribosomal protein S13, chloroplast precursor - Arabidopsis thaliana (Mouse-ear cress), partial (80%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0762230.1 length: 164 aa.
IPR001892 Ribosomal protein S13
method AccNumber shortName E-value location
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HAMAP MF_01315 Ribosomal_S13_S18 25.483 44-161
HMMPanther PTHR10871 30S 1.5e-61 27-163
HMMPfam PF00416 Ribosomal_S13 1.7e-37 46-150
ProfileScan PS50159 RIBOSOMAL_S13_2 34.915 47-153
IPR010979 Ribosomal protein S13-like, H2TH
Molecular Function GO:0003676 nucleic acid binding    
superfamily SSF46946 S13-like 3.3e-37 45-162
IPR018269 Ribosomal protein S13, conserved site
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
PatternScan PS00646 RIBOSOMAL_S13_1 NA 129-142
IPR019980 Ribosomal protein S13, bacterial-type
Molecular Function GO:0003723 RNA binding    
Molecular Function GO:0003735 structural constituent of ribosome    
Cellular Component GO:0005622 intracellular    
Cellular Component GO:0005840 ribosome    
Biological Process GO:0006412 translation    
HMMTigr TIGR03631 bact_S13: 9.8e-41 46-155
IPR027437 30s ribosomal protein S13, C-terminal
Gene3D G3DSA:4.10.910.10 no description 5.7e-23 117-163
no_ID  
Gene3D G3DSA:1.10.8.50 no description 2.8e-26 45-113
HMMPanther PTHR10871:SF1 30S 1.5e-61 27-163
Seg seg seg NA 152-164
Wolf-PSORT
Lj1g3v0762230.1	chlo 11, E.R. 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0762230.1