Miyakogusa Predicted Gene

Lj1g3v0752220.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7J463_MEDTR 429 67.2 75.7 (tr|G7J463) Auxin response factor OS=Medicago truncatula GN=MTR_3g073420 PE=4 SV=1
TAIR_pep AT1G77850.1 371 54.1 69.3 | Symbols: ARF17 | auxin response factor 17 | chr1:29272405-29275193 FORWARD LENGTH=585
Medicago Medtr3g073420.1 429 67.2 75.7 | auxin response factor, putative | HC | chr3:33106580-33110521 | 20130731
Soybean Glyma04g43350.1 419 63.6 73.5  
LJGI gnl|LJGI|TC72330 652 100.0 100.0 weakly similar to UniRef100_Q9AV47 Cluster: Auxin response factor 22; n=1; Oryza sativa Japonica Group|Rep: Auxin response factor 22 - Oryza sativa subsp. japonica (Rice), partial (27%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0752220.1 length: 400 aa.
IPR003340 B3 DNA binding domain
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF02362 B3 5.2e-22 146-247
HMMSmart SM01019 B3 3.6e-18 146-248
ProfileScan PS50863 B3 13.098 146-248
IPR010525 Auxin response factor
Molecular Function GO:0003677 DNA binding    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
Biological Process GO:0009725 response to hormone stimulus    
HMMPfam PF06507 Auxin_resp 5.5e-29 301-384
IPR015300 DNA-binding pseudobarrel domain
Gene3D G3DSA:2.40.330.10 no description 1.9e-33 141-249
superfamily SSF101936 DNA-binding 4e-30 129-289
no_ID  
HMMPanther PTHR31384 FAMILY 1.5e-134 24-385
Seg seg seg NA 33-49
265-283
Putative transmembrane regions
  From To
TM segments
SOSUI		 378 399
Wolf-PSORT
Lj1g3v0752220.1	vacu 4, chlo 3, extr 3, E.R._vacu 3
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0752220.1