Miyakogusa Predicted Gene

Lj1g3v0738020.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KUF0_SOYBN 921 80.6 86.4 (tr|K7KUF0) Serine hydroxymethyltransferase OS=Glycine max PE=3 SV=1
TAIR_pep AT1G36370.1 762 74.5 85.3 | Symbols: SHM7 | serine hydroxymethyltransferase 7 | chr1:13696240-13698576 REVERSE LENGTH=598
Medicago Medtr3g073470.1 910 86.3 93.0 | serine transhydroxymethyltransferase | HC | chr3:33129592-33135171 | 20130731
Soybean Glyma04g43360.1 852 90.3 95.7  
LJGI gnl|LJGI|FS339145 1485 100.0 100.0 similar to UniRef100_A9PL07 Cluster: Serine hydroxymethyltransferase; n=1; Populus tremuloides|Rep: Serine hydroxymethyltransferase - Populus tremuloides (Quaking aspen), partial (44%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0738020.1 length: 554 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HAMAP MF_00051 SHMT 38.395 100-551
HMMPanther PTHR11680 SERINE 3.8e-271 96-554
HMMPfam PF00464 SHMT 6e-163 103-502
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 1.1e-89 130-404
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 2.3e-48 405-553
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 3.1e-157 94-551
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 325-341
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 3.8e-271 96-554
Seg seg seg NA 13-29
35-52
Wolf-PSORT
Lj1g3v0738020.1	nucl 5, chlo 4, cyto 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0738020.1