Miyakogusa Predicted Gene

Lj1g3v0579730.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1KD47_SOYBN 1368 73.4 82.8 (tr|I1KD47) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G18485.1 1014 54.0 71.4 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr1:6363172-6366084 FORWARD LENGTH=970
Medicago Medtr2g058990.1 1320 70.6 80.5 | pentatricopeptide (PPR) repeat protein | HC | chr2:24361845-24364937 | 20130731
Soybean Glyma06g22850.1 1335 72.2 81.3  
LJGI gnl|LJGI|GO028489 61.9 82.0 82.0 similar to UniRef100_A7P9I6 Cluster: Chromosome chr3 scaffold_8, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_8, whole genome shotgun sequence - Vitis vinifera (Grape), partial (26%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0579730.1 length: 959 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.15 144-169
218-244
321-341
349-376
526-550
553-582
727-750
HMMPfam PF13041 PPR_2 1.4e-08 450-497
652-697
HMMTigr TIGR00756 PPR: 5.4e-09 144-177
349-383
453-486
553-585
655-688
ProfileScan PS51375 PPR 6.478 141-176
110-140
213-247
347-377
316-346
281-315
450-484
419-449
485-519
551-585
520-550
652-686
621-651
723-753
687-722
789-823
755-785
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.1e-07 654-813
no_ID  
HMMPanther PTHR24015 FAMILY 3e-296 25-959
HMMPanther PTHR24015:SF76 SUBFAMILY 3e-296 25-959
HMMPfam PF14432 DYW_deaminase 9e-15 841-949
Seg seg seg NA 6-22
25-41
266-277
279-294
878-889
Wolf-PSORT
Lj1g3v0579730.1	chlo 13.5, chlo_mito 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0579730.1