Miyakogusa Predicted Gene
- Lj1g3v0579550.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SPX8_LOTJA |
82.8 |
85.1 |
91.5 |
(tr|I3SPX8) Uncharacterized protein OS=Lotus japonicus PE=4 SV=1 |
| TAIR_pep |
AT5G15840.1 |
55.1 |
89.3 |
89.3 |
| Symbols: CO, FG | B-box type zinc finger protein with CCT domain | chr5:5171343-5172697 REVERSE LENGTH=373 |
| Medicago |
Medtr4g128930.1 |
70.5 |
64.4 |
69.5 |
| zinc finger constans-like protein | HC | chr4:53656301-53658369 | 20130731 |
| Soybean |
Glyma17g07420.1 |
73.9 |
69.1 |
72.7 |
|
| LJGI |
gnl|LJGI|TC74881 |
698 |
97.7 |
97.7 |
similar to UniRef100_Q9ZTK7 Cluster: CONSTANS-like protein 2; n=1; Malus x domestica|Rep: CONSTANS-like protein 2 - Malus domestica (Apple) (Malus sylvestris), partial (16%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0579550.1 |
length: 124 aa. |
| IPR010402 |
CCT domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF06203 |
CCT |
7.5e-05 |
20-40 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
84 |
106 |
- Wolf-PSORT
Lj1g3v0579550.1 cyto 6, chlo 2, extr 2, cysk 2, nucl 1, mito 1, cysk_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0579550.1 |
Not targeted |
-49.791 |
-20.738 |
-5.602 |
74.06% |
-23.451
|