Miyakogusa Predicted Gene
- Lj1g3v0525430.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KCV4_SOYBN |
363 |
79.6 |
90.5 |
(tr|I1KCV4) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT5G39510.1 |
296 |
63.6 |
84.5 |
| Symbols: VTI11, ATVTI1A, ATVTI11, ZIG, SGR4, VTI1A, ZIG1 | Vesicle transport v-SNARE family protein | chr5:15822035-15823591 FORWARD LENGTH=221 |
| Medicago |
Medtr3g037380.3 |
372 |
81.0 |
90.0 |
| vesicle transport V-SNARE protein | HC | chr3:13724559-13727810 | 20130731 |
| Soybean |
Glyma06g21130.1 |
363 |
79.6 |
90.5 |
|
| LJGI |
gnl|LJGI|TC75290 |
698 |
100.0 |
100.0 |
similar to UniRef100_A7PDI5 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (52%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0525430.2 |
length: 221 aa. |
| IPR007705 |
Vesicle transport v-SNARE, N-terminal |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006886 |
intracellular protein transport |
|
|
| Cellular Component |
GO:0016020 |
membrane |
|
|
| HMMPfam |
PF05008 |
V-SNARE |
2.5e-24 |
12-90 |
| IPR010989 |
t-SNARE |
| Cellular Component |
GO:0016020 |
membrane |
|
|
| Biological Process |
GO:0016192 |
vesicle-mediated transport |
|
|
| superfamily |
SSF47661 |
t-snare |
1e-26 |
6-94 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
67-95 |
| Gene3D |
G3DSA:1.20.5.110 |
no description |
2.5e-22 |
127-191 |
| Gene3D |
G3DSA:1.20.58.400 |
no description |
2e-31 |
1-95 |
| HMMPanther |
PTHR21230 |
VESICLE |
5.7e-126 |
3-220 |
| HMMPanther |
PTHR21230:SF14 |
SNARE |
5.7e-126 |
3-220 |
| HMMPfam |
PF12352 |
V-SNARE_C |
3.9e-22 |
128-193 |
| Seg |
seg |
seg |
NA |
205-215 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
197 |
218 |
- Wolf-PSORT
Lj1g3v0525430.2 golg 5, nucl 3, golg_plas 3, chlo 1, cyto 1, mito 1, plas 1, vacu 1, E.R. 1, chlo_mito 1, E.R._vacu 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0525430.2 |
Not targeted |
-111.039 |
-67.387 |
-6.782 |
99.99% |
-36.870
|