Miyakogusa Predicted Gene

Lj1g3v0525420.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL A5AF05_VITVI 664 58.8 74.7 (tr|A5AF05) Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_031722 PE=4 SV=1
TAIR_pep AT5G61400.1 458 43.0 63.3 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr5:24681550-24683514 FORWARD LENGTH=654
Medicago Medtr3g037490.1 705 67.6 80.5 | PPR containing plant-like protein | HC | chr3:13777398-13775665 | 20130731
Soybean Glyma06g21110.1 570 62.2 70.1  
LJGI gnl|LJGI|TC58694 1039 100.0 100.0 homologue to UniRef100_Q9SHF0 Cluster: T19E23.10; n=1; Arabidopsis thaliana|Rep: T19E23.10 - Arabidopsis thaliana (Mouse-ear cress), partial (5%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0525420.1 length: 622 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.051 91-113
123-151
HMMPfam PF12854 PPR_1 3.8e-08 256-288
HMMPfam PF13041 PPR_2 1.8e-09 155-202
295-344
366-414
435-483
515-561
HMMTigr TIGR00756 PPR: 1.1e-07 122-155
156-189
191-223
263-297
299-332
333-366
368-402
403-437
438-472
518-551
ProfileScan PS51375 PPR 5.996 119-153
87-117
154-188
189-223
224-260
296-330
261-295
331-365
366-400
401-435
436-470
471-505
516-550
551-585
586-620
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9.4e-06 263-399
no_ID  
HMMPanther PTHR24015 FAMILY 3.4e-157 3-618
HMMPanther PTHR24015:SF0 SUBFAMILY 3.4e-157 3-618
Seg seg seg NA 9-30
32-56
Wolf-PSORT
Lj1g3v0525420.1	mito 9, chlo 2, cyto 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0525420.1