Miyakogusa Predicted Gene
- Lj1g3v0415990.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3SAU1_MEDTR |
93.2 |
59.5 |
67.1 |
(tr|I3SAU1) Uncharacterized protein OS=Medicago truncatula PE=2 SV=1 |
| TAIR_pep |
AT2G46505.1 |
55.8 |
58.1 |
74.4 |
| Symbols: SDH4 | succinate dehydrogenase subunit 4 | chr2:19090013-19090468 REVERSE LENGTH=151 |
| Medicago |
Medtr3g078610.2 |
93.2 |
59.5 |
67.1 |
| succinate dehydrogenase subunit 4 | HC | chr3:35415954-35421765 | 20130731 |
| Soybean |
Glyma04g34830.1 |
89.7 |
58.2 |
64.6 |
|
| LJGI |
gnl|LJGI|FS357071 |
484 |
100.0 |
100.0 |
similar to UniRef100_Q8RVA9 Cluster: Succinate dehydrogenase subunit 4; n=1; Pisum sativum|Rep: Succinate dehydrogenase subunit 4 - Pisum sativum (Garden pea), partial (51%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0415990.1 |
length: 80 aa. |
| no_ID |
|
| method |
AccNumber |
shortName |
E-value |
location |
| Gene3D |
G3DSA:1.20.1300.10 |
no description |
1.5e-05 |
21-69 |
| Seg |
seg |
seg |
NA |
7-27 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
14 |
36 |
| 55 |
77 |
- Wolf-PSORT
Lj1g3v0415990.1 extr 7, chlo 1, nucl 1, cyto 1, mito 1, plas 1, vacu 1, E.R. 1, cyto_nucl 1, chlo_mito 1, nucl_plas 1, E.R._vacu 1, E.R._plas 1, mito_plas 1, cyto_E.R. 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0415990.1 |
Not targeted |
-66.022 |
-3.229 |
-20.002 |
93.75% |
-42.790
|