Miyakogusa Predicted Gene

Lj1g3v0411490.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KMP9_SOYBN 545 85.5 92.6 (tr|K7KMP9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G47990.1 486 79.9 88.4 | Symbols: SIS3 | SUGAR-INSENSITIVE 3 | chr3:17713367-17716051 REVERSE LENGTH=358
Medicago Medtr4g106960.5 538 83.8 91.6 | RING-finger ubiquitin ligase | HC | chr4:43964225-43959467 | 20130731
Soybean Glyma17g09790.1 521 84.5 92.2  
LJGI gnl|LJGI|TC81488 767 86.2 86.2 similar to UniRef100_A7PD18 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (73%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0411490.2 length: 297 aa.
IPR001841 Zinc finger, RING-type
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0008270 zinc ion binding    
HMMPfam PF13639 zf-RING_2 1.3e-14 234-277
HMMSmart SM00184 Ring 7e-06 235-275
ProfileScan PS50089 ZF_RING_2 12.770 235-276
IPR013083 Zinc finger, RING/FYVE/PHD-type
Gene3D G3DSA:3.30.40.10 no description 1.1e-14 231-279
no_ID  
HMMPanther PTHR22764 RING 5.5e-51 8-290
HMMPanther PTHR22764:SF7 SUBFAMILY 5.5e-51 8-290
superfamily SSF57850 RING/U-box 7.6e-20 202-282
Putative transmembrane regions
  From To
TM segments
SOSUI		 6 27
43 65
84 106
124 145
Wolf-PSORT
Lj1g3v0411490.2	chlo 7.5, chlo_mito 4.83333, cyto 2, cyto_mito 1.33333, plas 1, extr 1, vacu 1, cyto_nucl 1, cyto_pero 1, cyto_E.R. 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0411490.2