Miyakogusa Predicted Gene

Lj1g3v0342010.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JXA0_SOYBN 1495 89.7 93.2 (tr|I1JXA0) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G03340.1 1384 84.7 91.0 | Symbols: | ATPase, AAA-type, CDC48 protein | chr5:810091-813133 REVERSE LENGTH=810
Medicago Medtr7g101870.1 1394 84.5 90.0 | ATPase, AAA-type, CDC48 protein | HC | chr7:41094994-41090557 | 20130731
Soybean Glyma04g35950.1 1495 89.7 93.2  
LJGI gnl|LJGI|AW163981 93.7 87.4 87.4 similar to UniRef100_A9TF08 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (10%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0342010.1 length: 818 aa.
IPR003338 CDC48, N-terminal subdomain
method AccNumber shortName E-value location
HMMPfam PF02359 CDC48_N 8.2e-23 40-122
HMMSmart SM01073 Cell 7.3e-30 40-123
IPR003593 AAA+ ATPase domain
Molecular Function GO:0000166 nucleotide binding    
Molecular Function GO:0017111 nucleoside-triphosphatase activity    
HMMSmart SM00382 ATPases 2.7e-24 251-387
524-663
IPR003959 ATPase, AAA-type, core
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00004 AAA 1.4e-46 255-384
528-661
IPR003960 ATPase, AAA-type, conserved site
Molecular Function GO:0005524 ATP binding    
PatternScan PS00674 AAA NA 355-373
631-649
IPR004201 CDC48, domain 2
HMMPfam PF02933 CDC48_2 1.1e-10 142-204
HMMSmart SM01072 Cell 2.3e-15 140-206
IPR005938 ATPase, AAA-type, CDC48
Molecular Function GO:0016787 hydrolase activity    
HMMPanther PTHR23077:SF18 CELL 0 23-801
HMMTigr TIGR01243 CDC48: 3.8e-258 41-780
IPR009010 Aspartate decarboxylase-like domain
Gene3D G3DSA:2.40.40.20 no description 1.7e-48 20-122
superfamily SSF50692 ADC-like 1.7e-29 36-121
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 1.3e-68 485-778
215-448
no_ID  
Gene3D G3DSA:1.10.8.60 no description 2.1e-19 670-762
Gene3D G3DSA:3.10.330.10 no description 1.7e-43 123-214
Gene3D G3DSA:3.40.50.300 no description 4.2e-66 217-491
492-669
HMMPanther PTHR23077 AAA-FAMILY 0 23-801
Seg seg seg NA 600-614
729-745
superfamily SSF54585 Cdc48 2.2e-36 122-215
Wolf-PSORT
Lj1g3v0342010.1	cyto 8, chlo 3, cysk 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0342010.1