Miyakogusa Predicted Gene
- Lj1g3v0330930.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KCD0_SOYBN |
501 |
81.2 |
89.9 |
(tr|I1KCD0) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G40390.1 |
382 |
66.8 |
81.0 |
| Symbols: SIP1 | Raffinose synthase family protein | chr5:16161720-16165085 FORWARD LENGTH=783 |
| Medicago |
Medtr3g077280.1 |
500 |
82.9 |
88.2 |
| galactinol-raffinose galactosyltransferase | HC | chr3:34699323-34695961 | 20130731 |
| Soybean |
Glyma06g18890.1 |
500 |
81.2 |
89.9 |
|
| LJGI |
gnl|LJGI|AV421962 |
105 |
86.7 |
86.7 |
similar to UniRef100_Q8VWN6 Cluster: Raffinose synthase; n=1; Pisum sativum|Rep: Raffinose synthase - Pisum sativum (Garden pea), partial (20%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0330930.1 |
length: 287 aa. |
| IPR008811 |
Raffinose synthase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF05691 |
Raffinose_syn |
9.3e-132 |
1-272 |
| IPR013785 |
Aldolase-type TIM barrel |
| Molecular Function |
GO:0003824 |
catalytic activity |
|
|
| Gene3D |
G3DSA:3.20.20.70 |
no description |
5.5e-12 |
2-64 |
| IPR017853 |
Glycoside hydrolase, superfamily |
| superfamily |
SSF51445 |
(Trans)glycosidases |
4.2e-13 |
1-74 |
| no_ID |
|
| HMMPanther |
PTHR31268 |
FAMILY |
1.3e-119 |
1-287 |
| HMMPanther |
PTHR31268:SF0 |
SUBFAMILY |
1.3e-119 |
1-287 |
| Seg |
seg |
seg |
NA |
270-283 |
- Wolf-PSORT
Lj1g3v0330930.1 nucl 5, chlo 3, cyto 3, mito 1, extr 1, vacu 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0330930.1 |
|