Miyakogusa Predicted Gene

Lj1g3v0295770.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7KL29_SOYBN 1011 78.7 84.7 (tr|K7KL29) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT5G63200.1 740 62.0 75.6 | Symbols: | tetratricopeptide repeat (TPR)-containing protein | chr5:25349043-25352899 FORWARD LENGTH=649
Medicago Medtr3g075240.1 967 75.8 82.3 | O-linked N-acetylglucosamine transferase | HC | chr3:34246562-34240871 | 20130731
Soybean Glyma06g18330.1 1000 77.7 84.3  
LJGI gnl|LJGI|TC82379 1620 99.5 99.5 similar to UniRef100_A7PCL0 Cluster: Chromosome chr17 scaffold_12, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr17 scaffold_12, whole genome shotgun sequence - Vitis vinifera (Grape), partial (42%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0295770.1 length: 644 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00515 TPR_1 0.00045 357-388
519-547
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 4.8e-19 137-311
446-533
534-631
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 23.408 141-174
232-299
355-388
467-621
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 0.0064 141-170
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 0.011 141-174
232-265
266-299
355-388
435-468
484-517
518-551
554-587
588-621
ProfileScan PS50005 TPR 9.853 141-174
232-265
266-299
355-388
518-551
554-587
588-621
no_ID  
HMMPanther PTHR23083 TETRATRICOPEPTIDE 9.7e-129 25-636
HMMPanther PTHR23083:SF192GLL3576 PROTEIN 9.7e-129 25-636
HMMPfam PF13371 TPR_9 0.0042 241-302
HMMPfam PF13414 TPR_11 5.5e-12 556-619
Seg seg seg NA 36-52
250-262
315-331
superfamily SSF48452 TPR-like 6.9e-23 138-394
503-636
Putative transmembrane regions
  From To
TM segments
SOSUI		 301 323
Wolf-PSORT
Lj1g3v0295770.1	nucl 6.5, cyto 5, nucl_plas 4, mito 1, vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0295770.1