Miyakogusa Predicted Gene

Lj1g3v0268490.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7M722_SOYBN 686 54.2 64.7 (tr|K7M722) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT1G77250.1 353 40.8 56.6 | Symbols: | RING/FYVE/PHD-type zinc finger family protein | chr1:29020444-29022938 REVERSE LENGTH=522

Medicago Medtr3g088665.1 537 48.0 60.2 | PHD-finger protein | LC | chr3:40402136-40407486 | 20130731

Soybean Glyma06g12450.1 505 64.0 75.4

LJGI gnl|LJGI|BP048723 303 96.6 96.6 weakly similar to UniRef100_Q235Z4 Cluster: Protein kinase domain containing protein; n=1; Tetrahymena thermophila SB210|Rep: Protein kinase domain containing protein - Tetrahymena thermophila SB210, partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0268490.1 length: 649 aa.

IPR001841 Zinc finger, RING-type

method AccNumber shortName E-value location

Molecular Function GO:0005515 protein binding

Molecular Function GO:0008270 zinc ion binding

ProfileScan PS50089 ZF_RING_2 8.535 490-537

IPR001965 Zinc finger, PHD-type

Molecular Function GO:0005515 protein binding

Molecular Function GO:0008270 zinc ion binding

HMMSmart SM00249 PHD 7.8e-08 379-425
489-538
539-584

IPR011011 Zinc finger, FYVE/PHD-type

superfamily SSF57903 FYVE/PHD 1.1e-06 538-602
343-425
439-538

IPR013083 Zinc finger, RING/FYVE/PHD-type

Gene3D G3DSA:3.30.40.10 no description 5.4e-15 379-426
539-585

IPR019787 Zinc finger, PHD-finger

Molecular Function GO:0005515 protein binding

HMMPfam PF00628 PHD 3.3e-12 380-426
539-584

ProfileScan PS50016 ZF_PHD_2 10.211 377-427
536-586

no_ID

HMMPanther PTHR10615 HISTONE 1.3e-29 513-616

HMMPanther PTHR10615:SF5 PHD 1.3e-29 513-616

Seg seg seg NA 33-44
460-472

Wolf-PSORT

Lj1g3v0268490.1 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0268490.1 Not targeted -34.129 -0.219 -6.230 39.68% -27.681

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7M722_SOYBN	686	54.2	64.7	(tr\|K7M722) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT1G77250.1	353	40.8	56.6	\| Symbols: \| RING/FYVE/PHD-type zinc finger family protein \| chr1:29020444-29022938 REVERSE LENGTH=522
Medicago	Medtr3g088665.1	537	48.0	60.2	\| PHD-finger protein \| LC \| chr3:40402136-40407486 \| 20130731
Soybean	Glyma06g12450.1	505	64.0	75.4
LJGI	gnl\|LJGI\|BP048723	303	96.6	96.6	weakly similar to UniRef100_Q235Z4 Cluster: Protein kinase domain containing protein; n=1; Tetrahymena thermophila SB210\|Rep: Protein kinase domain containing protein - Tetrahymena thermophila SB210, partial (5%)

IPR001841	Zinc finger, RING-type
Lj1g3v0268490.1				length: 649 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0005515	protein binding
Molecular Function	GO:0008270	zinc ion binding
ProfileScan	PS50089	ZF_RING_2	8.535	490-537
IPR001965	Zinc finger, PHD-type
Molecular Function	GO:0005515	protein binding
Molecular Function	GO:0008270	zinc ion binding
HMMSmart	SM00249	PHD	7.8e-08	379-425 489-538 539-584
IPR011011	Zinc finger, FYVE/PHD-type
superfamily	SSF57903	FYVE/PHD	1.1e-06	538-602 343-425 439-538
IPR013083	Zinc finger, RING/FYVE/PHD-type
Gene3D	G3DSA:3.30.40.10	no description	5.4e-15	379-426 539-585
IPR019787	Zinc finger, PHD-finger
Molecular Function	GO:0005515	protein binding
HMMPfam	PF00628	PHD	3.3e-12	380-426 539-584
ProfileScan	PS50016	ZF_PHD_2	10.211	377-427 536-586
no_ID
HMMPanther	PTHR10615	HISTONE	1.3e-29	513-616
HMMPanther	PTHR10615:SF5	PHD	1.3e-29	513-616
Seg	seg	seg	NA	33-44 460-472