Miyakogusa Predicted Gene
- Lj1g3v0264160.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1MAE5_SOYBN |
295 |
81.6 |
86.0 |
(tr|I1MAE5) PIN6b OS=Glycine max GN=PIN6b PE=2 SV=1 |
| TAIR_pep |
AT1G77110.1 |
253 |
68.1 |
78.4 |
| Symbols: PIN6 | Auxin efflux carrier family protein | chr1:28970855-28974408 FORWARD LENGTH=570 |
| Medicago |
Medtr1g029190.1 |
259 |
78.2 |
84.4 |
| auxin efflux carrier family transporter | HC | chr1:9970586-9960584 | 20130731 |
| Soybean |
Glyma14g27900.1 |
295 |
81.6 |
86.0 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0264160.1 |
length: 183 aa. |
| IPR004776 |
Auxin efflux carrier |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| Biological Process |
GO:0055085 |
transmembrane transport |
|
|
| HMMPfam |
PF03547 |
Mem_trans |
4.3e-68 |
22-178 |
| IPR014024 |
Auxin efflux carrier, plant type |
| HMMTigr |
TIGR00946 |
2a69: |
6.8e-74 |
21-183 |
| no_ID |
|
| HMMPanther |
PTHR31752 |
FAMILY |
3.3e-113 |
1-183 |
| HMMPanther |
PTHR31752:SF0 |
SUBFAMILY |
3.3e-113 |
1-183 |
| Seg |
seg |
seg |
NA |
62-76 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
10 |
31 |
| 40 |
62 |
| 74 |
96 |
| 104 |
126 |
| 131 |
153 |
| 158 |
180 |
- Wolf-PSORT
Lj1g3v0264160.1 vacu 6, cyto 5, plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0264160.1 |
|