Miyakogusa Predicted Gene

Lj1g3v0246860.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LER5_SOYBN 1614 79.9 85.6 (tr|K7LER5) Uncharacterized protein OS=Glycine max PE=3 SV=1
TAIR_pep AT3G24495.1 1222 61.2 74.3 | Symbols: MSH7, MSH6-2, ATMSH7 | MUTS homolog 7 | chr3:8912418-8918086 REVERSE LENGTH=1109
Medicago Medtr6g086270.1 1635 76.6 82.9 | DNA mismatch repair protein msh6 | HC | chr6:32387897-32378956 | 20130731
Soybean Glyma09g32150.1 1534 80.5 86.1  
LJGI gnl|LJGI|TC73374 1049 99.4 99.4 similar to UniRef100_Q9SMV7 Cluster: DNA mismatch repair protein MSH6-2; n=1; Arabidopsis thaliana|Rep: DNA mismatch repair protein MSH6-2 - Arabidopsis thaliana (Mouse-ear cress), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0246860.1 length: 1006 aa.
IPR000432 DNA mismatch repair protein MutS, C-terminal
method AccNumber shortName E-value location
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF00488 MutS_V 2.2e-87 705-945
HMMSmart SM00534 ATPase 1.3e-106 745-941
PatternScan PS00486 DNA_MISMATCH_REPAIR_2 NA 826-842
IPR007695 DNA mismatch repair protein MutS-like, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF01624 MutS_I 5.1e-30 176-286
IPR007696 DNA mismatch repair protein MutS, core
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05192 MutS_III 1.5e-35 463-680
HMMSmart SM00533 DNA-binding 3.5e-17 477-724
superfamily SSF48334 DNA 2.4e-31 460-639
IPR007860 DNA mismatch repair protein MutS, connector domain
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
HMMPfam PF05188 MutS_II 2.9e-10 296-439
superfamily SSF53150 DNA 1e-06 285-473
IPR015536 DNA mismatch repair protein MutS-homologue MSH6
HMMPanther PTHR11361:SF31 MUTS 5.8e-294 122-976
IPR016151 DNA mismatch repair protein MutS, N-terminal
Molecular Function GO:0005524 ATP binding    
Biological Process GO:0006298 mismatch repair    
Molecular Function GO:0030983 mismatched DNA binding    
Gene3D G3DSA:3.40.1170.10 no description 2e-28 162-288
superfamily SSF55271 DNA 2.7e-30 165-281
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 8.4e-51 700-947
no_ID  
Gene3D G3DSA:1.10.1420.10 no description 4.3e-33 456-631
Gene3D G3DSA:3.40.50.300 no description 1.5e-64 706-945
HMMPanther PTHR11361 DNA 5.8e-294 122-976
Seg seg seg NA 553-571
587-593
647-658
Putative transmembrane regions
  From To
TM segments
SOSUI		 757 779
Wolf-PSORT
Lj1g3v0246860.1	cyto 7, nucl 4, cyto_pero 4
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0246860.1