Miyakogusa Predicted Gene

Lj1g3v0180960.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3S8P2_LOTJA 187 100.0 100.0 (tr|I3S8P2) Transcription initiation factor IIA subunit 2 OS=Lotus japonicus PE=3 SV=1
TAIR_pep AT4G24440.2 177 92.1 98.9 | Symbols: | transcription initiation factor IIA gamma chain / TFIIA-gamma (TFIIA-S) | chr4:12633460-12634553 FORWARD LENGTH=106
Medicago Medtr7g005540.1 187 98.9 100.0 | transcription initiation factor IIA subunit 2 | HC | chr7:163397-159540 | 20130731
Soybean Glyma02g38030.1 186 98.9 100.0  
LJGI gnl|LJGI|TC63741 529 100.0 100.0 similar to UniRef100_Q1EMR2 Cluster: Transcription initiation factor; n=1; Plantago major|Rep: Transcription initiation factor - Plantago major (Common plantain), partial (93%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0180960.1 length: 89 aa.
IPR003194 Transcription initiation factor IIA, gamma subunit
method AccNumber shortName E-value location
Cellular Component GO:0005672 transcription factor TFIIA complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
HMMPanther PTHR10966 TRANSCRIPTION 2.1e-51 1-88
IPR009083 Transcription factor IIA, helical
Cellular Component GO:0005672 transcription factor TFIIA complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
superfamily SSF47396 Transcription 1.5e-17 4-54
IPR009088 Transcription factor IIA, beta-barrel
Cellular Component GO:0005672 transcription factor TFIIA complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
Gene3D G3DSA:2.30.18.10 no description 7.9e-17 55-86
superfamily SSF50784 Transcription 6.5e-14 52-86
IPR015871 Transcription initiation factor IIA, gamma subunit, C-terminal
Cellular Component GO:0005672 transcription factor TFIIA complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
HMMPfam PF02751 TFIIA_gamma_C 5.7e-19 52-89
IPR015872 Transcription initiation factor IIA, gamma subunit, N-terminal
Cellular Component GO:0005672 transcription factor TFIIA complex    
Biological Process GO:0006367 transcription initiation from RNA polymerase II promoter    
BlastProDom PD009224 T2AG_ARATH_Q39236; 4e-22 1-50
Gene3D G3DSA:1.10.287.190 no description 1.1e-26 1-54
HMMPfam PF02268 TFIIA_gamma_N 3.3e-24 3-50
no_ID  
HMMPanther PTHR10966:SF0 TRANSCRIPTION 2.1e-51 1-88
Wolf-PSORT
Lj1g3v0180960.1	nucl 7.5, cyto_nucl 5.5, mito 3, cyto 2.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0180960.1