Miyakogusa Predicted Gene
- Lj1g3v0178870.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1JH21_SOYBN |
210 |
74.3 |
81.6 |
(tr|I1JH21) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT4G24430.1 |
160 |
53.7 |
69.1 |
| Symbols: | Rhamnogalacturonate lyase family protein | chr4:12630018-12632975 FORWARD LENGTH=646 |
| Medicago |
Medtr5g066770.1 |
213 |
75.7 |
81.6 |
| rhamnogalacturonate lyase B-like protein | HC | chr5:28213045-28205323 | 20130731 |
| Soybean |
Glyma02g38050.1 |
210 |
74.3 |
81.6 |
|
| LJGI |
--No_Hits--
|
|
|
|
|
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0178870.1 |
length: 136 aa. |
| IPR010325 |
Rhamnogalacturonate lyase |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPfam |
PF06045 |
Rhamnogal_lyase |
3.6e-60 |
1-136 |
| no_ID |
|
| HMMPanther |
PTHR32018 |
FAMILY |
2.8e-47 |
1-136 |
| HMMPanther |
PTHR32018:SF0 |
SUBFAMILY |
2.8e-47 |
1-136 |
| Seg |
seg |
seg |
NA |
66-78 |
- Wolf-PSORT
Lj1g3v0178870.1 chlo 5, nucl 4, cyto 2, extr 2, cysk_nucl 2, nucl_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0178870.1 |
|