Miyakogusa Predicted Gene

Lj1g3v0175780.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I3SWA9_LOTJA 372 81.7 81.7 (tr|I3SWA9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep AT3G57230.1 269 65.3 81.2 | Symbols: AGL16 | AGAMOUS-like 16 | chr3:21177710-21180671 FORWARD LENGTH=240
Medicago Medtr2g009890.1 275 58.0 71.8 | MADS-box transcription factor | HC | chr2:2114851-2134724 | 20130731
Soybean Glyma13g32810.1 253 55.6 68.5  
LJGI gnl|LJGI|DC595031 1104 99.8 99.8 similar to UniRef100_A7NUI9 Cluster: Chromosome chr18 scaffold_1, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_1, whole genome shotgun sequence - Vitis vinifera (Grape), partial (80%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0175780.1 length: 243 aa.
IPR002100 Transcription factor, MADS-box
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0046983 protein dimerization activity    
FPrintScan PR00404 MADSDOMAIN 3.2e-28 3-23
23-38
38-59
HMMPfam PF00319 SRF-TF 2.2e-25 10-59
HMMSmart SM00432 no description 3e-39 1-60
PatternScan PS00350 MADS_BOX_1 NA 3-57
ProfileScan PS50066 MADS_BOX_2 31.763 1-61
superfamily SSF55455 SRF-like 2.4e-32 2-94
IPR002487 Transcription factor, K-box
Molecular Function GO:0003700 sequence-specific DNA binding transcription factor activity    
Cellular Component GO:0005634 nucleus    
Biological Process GO:0006355 regulation of transcription, DNA-dependent    
HMMPfam PF01486 K-box 6.8e-23 78-170
ProfileScan PS51297 K_BOX 15.910 86-176
no_ID  
Coil coil coiled-coil NA 86-107
HMMPanther PTHR11945 MADS 1.6e-104 1-185
HMMPanther PTHR11945:SF96 AGL21 1.6e-104 1-185
Seg seg seg NA 122-134
215-229
Wolf-PSORT
Lj1g3v0175780.1	nucl 9, plas 1.5, golg_plas 1.5, chlo 1, mito 1, cysk 1, chlo_mito 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0175780.1