Miyakogusa Predicted Gene

Lj1g3v0173680.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K5Z4_MEDTR 471 92.2 97.9 (tr|G7K5Z4) Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_5g067060 PE=1 SV=1
TAIR_pep AT4G37930.1 434 84.8 93.4 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517
Medicago Medtr5g067060.1 471 92.2 97.9 | serine transhydroxymethyltransferase | HC | chr5:28321057-28329894 | 20130731
Soybean Glyma02g38160.2 466 90.9 96.7  
LJGI gnl|LJGI|TC64633 1273 99.8 99.8 homologue to UniRef100_Q45FE6 Cluster: Serine hydroxymethyltransferase; n=1; Medicago truncatula|Rep: Serine hydroxymethyltransferase - Medicago truncatula (Barrel medic), partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0173680.2 length: 243 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HMMPanther PTHR11680 SERINE 1.5e-151 1-243
HMMPfam PF00464 SHMT 1.2e-103 1-199
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 4.3e-35 2-100
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 3.6e-60 101-243
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 7e-86 1-243
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 25-41
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 1.5e-151 1-243
Wolf-PSORT
Lj1g3v0173680.2	cyto 8, cysk 3, extr 2, cysk_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0173680.2