Miyakogusa Predicted Gene

Lj1g3v0173680.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K5Z4_MEDTR 808 91.0 94.5 (tr|G7K5Z4) Serine hydroxymethyltransferase OS=Medicago truncatula GN=MTR_5g067060 PE=1 SV=1
TAIR_pep AT4G37930.1 773 85.0 91.1 | Symbols: SHM1, STM, SHMT1 | serine transhydroxymethyltransferase 1 | chr4:17831891-17834742 REVERSE LENGTH=517
Medicago Medtr5g067060.1 808 91.0 94.5 | serine transhydroxymethyltransferase | HC | chr5:28321057-28329894 | 20130731
Soybean Glyma02g38160.2 832 91.1 95.7  
LJGI gnl|LJGI|FS340433 1511 99.7 99.7 homologue to UniRef100_A9PL06 Cluster: Mitochondrial serine hydroxymethyltransferase; n=1; Populus tremuloides|Rep: Mitochondrial serine hydroxymethyltransferase - Populus tremuloides (Quaking aspen), partial (46%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0173680.1 length: 444 aa.
IPR001085 Serine hydroxymethyltransferase
method AccNumber shortName E-value location
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
HMMPIR PIRSF000412 Serine/glycine 4.9e-180 16-443
HMMPanther PTHR11680 SERINE 6.8e-283 5-425
HMMPfam PF00464 SHMT 2e-201 48-430
IPR015421 Pyridoxal phosphate-dependent transferase, major region, subdomain 1
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.40.640.10 no description 9.2e-100 77-346
IPR015422 Pyridoxal phosphate-dependent transferase, major region, subdomain 2
Molecular Function GO:0003824 catalytic activity    
Molecular Function GO:0030170 pyridoxal phosphate binding    
Gene3D G3DSA:3.90.1150.10 no description 1.6e-38 347-428
IPR015424 Pyridoxal phosphate-dependent transferase
superfamily SSF53383 PLP-dependent 3.2e-160 41-425
IPR019798 Serine hydroxymethyltransferase, pyridoxal phosphate binding site
Molecular Function GO:0004372 glycine hydroxymethyltransferase activity    
Biological Process GO:0006544 glycine metabolic process    
Biological Process GO:0006563 L-serine metabolic process    
Molecular Function GO:0030170 pyridoxal phosphate binding    
PatternScan PS00096 SHMT NA 271-287
no_ID  
HMMPanther PTHR11680:SF0 SUBFAMILY 6.8e-283 5-425
Wolf-PSORT
Lj1g3v0173680.1	mito 10.5, chlo_mito 7.5, chlo 3.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0173680.1