Miyakogusa Predicted Gene

Lj1g3v0173670.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL G7K5Z9_MEDTR 648 72.3 82.1 (tr|G7K5Z9) Pentatricopeptide repeat-containing protein OS=Medicago truncatula GN=MTR_5g067140 PE=4 SV=1
TAIR_pep AT1G11290.1 202 29.0 50.4 | Symbols: CRR22 | Pentatricopeptide repeat (PPR) superfamily protein | chr1:3791454-3793883 REVERSE LENGTH=809
Medicago Medtr5g067140.1 648 72.3 82.1 | pentatricopeptide (PPR) repeat protein | HC | chr5:28350546-28353833 | 20130731
Soybean Glyma02g38170.1 453 66.2 75.8  
LJGI --No_Hits--        
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0173670.1 length: 440 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 1 340-352
HMMPfam PF13041 PPR_2 5.1e-10 136-182
236-285
HMMTigr TIGR00756 PPR: 2.9e-05 110-138
138-171
239-273
ProfileScan PS51375 PPR 6.654 136-170
105-135
237-271
206-236
272-306
307-341
384-418
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 3.6e-05 102-328
no_ID  
HMMPanther PTHR24015 FAMILY 1.6e-98 85-433
HMMPanther PTHR24015:SF169PENTATRICOPEPTIDE (PPR) 1.6e-98 85-433
Seg seg seg NA 106-117
Putative transmembrane regions
  From To
TM segments
SOSUI		 384 405
416 438
Wolf-PSORT
Lj1g3v0173670.1	chlo 8, cyto 2, extr 2, nucl 1, vacu 1, cyto_pero 1, cyto_E.R. 1, cyto_plas 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0173670.1