Miyakogusa Predicted Gene

Lj1g3v0128850.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3SQD7_LOTJA 672 99.7 99.7 (tr|I3SQD7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT1G65020.1 412 66.2 77.5 | Symbols: | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). | chr1:24154523-24156511 REVERSE LENGTH=319

Medicago Medtr5g007360.1 506 76.8 87.3 | RAP annotation release 2, NERD domain protein | HC | chr5:1310216-1315059 | 20130731

Soybean Glyma11g01140.1 513 80.8 88.1

LJGI gnl|LJGI|TC66777 1961 99.9 99.9 weakly similar to UniRef100_A7PB82 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0128850.1 length: 329 aa.

IPR011528 NERD

method AccNumber shortName E-value location

HMMPfam PF08378 NERD 2.1e-10 45-153

ProfileScan PS50965 NERD 17.710 37-154

Wolf-PSORT

Lj1g3v0128850.1 cyto 8, nucl 4, cyto_pero 4, cyto_E.R. 4

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0128850.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3SQD7_LOTJA	672	99.7	99.7	(tr\|I3SQD7) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT1G65020.1	412	66.2	77.5	\| Symbols: \| FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: endoplasmic reticulum, plasma membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: NERD (InterPro:IPR011528); Has 69 Blast hits to 69 proteins in 27 species: Archae - 0; Bacteria - 18; Metazoa - 8; Fungi - 0; Plants - 36; Viruses - 0; Other Eukaryotes - 7 (source: NCBI BLink). \| chr1:24154523-24156511 REVERSE LENGTH=319
Medicago	Medtr5g007360.1	506	76.8	87.3	\| RAP annotation release 2, NERD domain protein \| HC \| chr5:1310216-1315059 \| 20130731
Soybean	Glyma11g01140.1	513	80.8	88.1
LJGI	gnl\|LJGI\|TC66777	1961	99.9	99.9	weakly similar to UniRef100_A7PB82 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (82%)

IPR011528	NERD
Lj1g3v0128850.1				length: 329 aa.
method	AccNumber	shortName	E-value	location
HMMPfam	PF08378	NERD	2.1e-10	45-153
ProfileScan	PS50965	NERD	17.710	37-154