Miyakogusa Predicted Gene

Lj1g3v0118830.2

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL K7L940_SOYBN 864 72.6 76.4 (tr|K7L940) Uncharacterized protein OS=Glycine max PE=4 SV=1

TAIR_pep AT3G54230.2 515 46.9 57.4 | Symbols: SUA | suppressor of abi3-5 | chr3:20073872-20080142 FORWARD LENGTH=1008

Medicago Medtr8g070990.1 902 73.2 77.3 | RNA-binding protein, putative | HC | chr8:30090202-30098364 | 20130731

Soybean Glyma08g35510.1 864 72.6 76.4

LJGI gnl|LJGI|TC65570 971 99.8 99.8 similar to UniRef100_A7PCC5 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0118830.2 length: 616 aa.

IPR000504 RNA recognition motif domain

method AccNumber shortName E-value location

Molecular Function GO:0003676 nucleic acid binding

HMMPfam PF00076 RRM_1 3.5e-17 470-536

HMMSmart SM00360 RNA 2.9e-23 312-387
469-544

ProfileScan PS50102 RRM 17.694 311-391
468-548

IPR001876 Zinc finger, RanBP2-type

Cellular Component GO:0005622 intracellular

Molecular Function GO:0008270 zinc ion binding

Gene3D G3DSA:4.10.1060.10 no description 5.2e-12 414-443

HMMSmart SM00547 Zinc 5.1e-07 415-439

PatternScan PS01358 ZF_RANBP2_1 NA 417-436

ProfileScan PS50199 ZF_RANBP2_2 9.665 413-442

IPR012677 Nucleotide-binding, alpha-beta plait

Molecular Function GO:0000166 nucleotide binding

Gene3D G3DSA:3.30.70.330 no description 2e-22 309-390
458-548

no_ID

HMMPanther PTHR13948 RNA-BINDING 3.2e-180 1-616

HMMPanther PTHR13948:SF3 RNA-BINDING 3.2e-180 1-616

HMMPfam PF14259 RRM_6 6.5e-15 313-384

Seg seg seg NA 145-159
224-257
262-276
288-303
551-573

superfamily SSF54928 RNA-binding 4.7e-36 309-548

superfamily SSF90209 Ran 1.4e-08 403-445

Wolf-PSORT

Lj1g3v0118830.2 nucl 14

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0118830.2

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	K7L940_SOYBN	864	72.6	76.4	(tr\|K7L940) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep	AT3G54230.2	515	46.9	57.4	\| Symbols: SUA \| suppressor of abi3-5 \| chr3:20073872-20080142 FORWARD LENGTH=1008
Medicago	Medtr8g070990.1	902	73.2	77.3	\| RNA-binding protein, putative \| HC \| chr8:30090202-30098364 \| 20130731
Soybean	Glyma08g35510.1	864	72.6	76.4
LJGI	gnl\|LJGI\|TC65570	971	99.8	99.8	similar to UniRef100_A7PCC5 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (5%)

IPR000504	RNA recognition motif domain
Lj1g3v0118830.2				length: 616 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003676	nucleic acid binding
HMMPfam	PF00076	RRM_1	3.5e-17	470-536
HMMSmart	SM00360	RNA	2.9e-23	312-387 469-544
ProfileScan	PS50102	RRM	17.694	311-391 468-548
IPR001876	Zinc finger, RanBP2-type
Cellular Component	GO:0005622	intracellular
Molecular Function	GO:0008270	zinc ion binding
Gene3D	G3DSA:4.10.1060.10	no description	5.2e-12	414-443
HMMSmart	SM00547	Zinc	5.1e-07	415-439
PatternScan	PS01358	ZF_RANBP2_1	NA	417-436
ProfileScan	PS50199	ZF_RANBP2_2	9.665	413-442
IPR012677	Nucleotide-binding, alpha-beta plait
Molecular Function	GO:0000166	nucleotide binding
Gene3D	G3DSA:3.30.70.330	no description	2e-22	309-390 458-548
no_ID
HMMPanther	PTHR13948	RNA-BINDING	3.2e-180	1-616
HMMPanther	PTHR13948:SF3	RNA-BINDING	3.2e-180	1-616
HMMPfam	PF14259	RRM_6	6.5e-15	313-384
Seg	seg	seg	NA	145-159 224-257 262-276 288-303 551-573
superfamily	SSF54928	RNA-binding	4.7e-36	309-548
superfamily	SSF90209	Ran	1.4e-08	403-445