Miyakogusa Predicted Gene

Lj1g3v0118830.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7MGE9_SOYBN 569 69.4 72.4 (tr|K7MGE9) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G54230.1 322 46.2 55.8 | Symbols: SUA | suppressor of abi3-5 | chr3:20073872-20080142 FORWARD LENGTH=1007
Medicago Medtr8g070990.7 573 67.5 71.7 | RNA-binding protein, putative | HC | chr8:30090202-30098364 | 20130731
Soybean Glyma16g18030.1 569 69.4 72.4  
LJGI gnl|LJGI|TC69727 371 99.5 99.5 similar to UniRef100_A7PCC5 Cluster: Chromosome chr2 scaffold_11, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr2 scaffold_11, whole genome shotgun sequence - Vitis vinifera (Grape), partial (14%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0118830.1 length: 486 aa.
IPR000504 RNA recognition motif domain
method AccNumber shortName E-value location
Molecular Function GO:0003676 nucleic acid binding    
HMMPfam PF00076 RRM_1 2.6e-12 2-54
HMMSmart SM00360 RNA 1.2e-06 1-62
ProfileScan PS50102 RRM 14.795 1-66
IPR012677 Nucleotide-binding, alpha-beta plait
Molecular Function GO:0000166 nucleotide binding    
Gene3D G3DSA:3.30.70.330 no description 7.3e-16 2-66
no_ID  
HMMPanther PTHR13948 RNA-BINDING 3e-109 1-425
HMMPanther PTHR13948:SF3 RNA-BINDING 3e-109 1-425
Seg seg seg NA 69-91
220-250
288-299
369-384
superfamily SSF54928 RNA-binding 5e-17 1-66
Wolf-PSORT
Lj1g3v0118830.1	nucl 12, nucl_plas 7.5
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0118830.1