Miyakogusa Predicted Gene

Lj1g3v0117760.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I3T8G9_LOTJA 247 78.3 78.3 (tr|I3T8G9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1

TAIR_pep AT5G16660.2 122 73.5 83.1 | Symbols: | unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). | chr5:5465699-5467006 REVERSE LENGTH=166

Medicago Medtr5g007210.1 157 56.0 64.5 | transmembrane protein, putative | HC | chr5:1243259-1247003 | 20130731

Soybean Glyma01g44450.2 197 64.6 68.9

LJGI gnl|LJGI|GO036246 948 99.6 99.6 similar to UniRef100_A7PB65 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (89%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0117760.1 length: 161 aa.

no_ID

method AccNumber shortName E-value location

Coil coil coiled-coil NA 112-140

Seg seg seg NA 39-54
62-80

Wolf-PSORT

Lj1g3v0117760.1 nucl 7, chlo 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0117760.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I3T8G9_LOTJA	247	78.3	78.3	(tr\|I3T8G9) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1
TAIR_pep	AT5G16660.2	122	73.5	83.1	\| Symbols: \| unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast, membrane; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G02900.1); Has 106 Blast hits to 106 proteins in 32 species: Archae - 0; Bacteria - 28; Metazoa - 0; Fungi - 0; Plants - 78; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). \| chr5:5465699-5467006 REVERSE LENGTH=166
Medicago	Medtr5g007210.1	157	56.0	64.5	\| transmembrane protein, putative \| HC \| chr5:1243259-1247003 \| 20130731
Soybean	Glyma01g44450.2	197	64.6	68.9
LJGI	gnl\|LJGI\|GO036246	948	99.6	99.6	similar to UniRef100_A7PB65 Cluster: Chromosome chr16 scaffold_10, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr16 scaffold_10, whole genome shotgun sequence - Vitis vinifera (Grape), partial (89%)

no_ID
Lj1g3v0117760.1				length: 161 aa.
method	AccNumber	shortName	E-value	location
Coil	coil	coiled-coil	NA	112-140
Seg	seg	seg	NA	39-54 62-80