| database | Accession | Score | Iden (%) |
Posi (%) |
Definition |
|---|---|---|---|---|---|
| TrEMBL | I1LFV1_SOYBN | 1435 | 82.8 | 89.5 | (tr|I1LFV1) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep | AT3G22690.2 | 984 | 57.2 | 73.7 | | Symbols: | INVOLVED IN: photosystem II assembly, regulation of chlorophyll biosynthetic process, photosystem I assembly, thylakoid membrane organization, RNA modification; LOCATED IN: chloroplast; EXPRESSED IN: 13 plant structures; EXPRESSED DURING: LP.04 four leaves visible, 4 anthesis, petal differentiation and expansion stage, E expanded cotyledon stage, D bilateral stage; CONTAINS InterPro DOMAIN/s: Pentatricopeptide repeat (InterPro:IPR002885); BEST Arabidopsis thaliana protein match is: Tetratricopeptide repeat (TPR)-like superfamily protein (TAIR:AT2G29760.1). | chr3:8022006-8024534 REVERSE LENGTH=842 |
| Medicago | Medtr5g006570.1 | 1340 | 77.4 | 86.1 | | pentatricopeptide (PPR) repeat protein | HC | chr5:988953-991582 | 20130731 |
| Soybean | Glyma11g00940.1 | 1423 | 82.8 | 89.4 | |
| LJGI | gnl|LJGI|GO023325 | 153 | 94.8 | 94.8 |
| Lj1g3v0114220.1 | length: 851 aa. | |||
| IPR002885 | Pentatricopeptide repeat | |||
|---|---|---|---|---|
| method | AccNumber | shortName | E-value | location |
| HMMPfam | PF01535 | PPR | 0.00017 | 111-136 617-643 |
| HMMPfam | PF13041 | PPR_2 | 2.7e-08 | 210-258 310-358 411-443 443-481 544-591 |
| HMMPfam | PF13812 | PPR_3 | 0.015 | 386-409 |
| HMMTigr | TIGR00756 | PPR: | 0.00065 | 111-144 212-245 313-346 414-445 445-475 547-579 618-642 |
| ProfileScan | PS51375 | PPR | 6.160 | 108-143 144-178 210-244 179-209 245-279 311-345 280-310 412-446 381-411 346-380 447-477 544-578 513-543 478-512 579-609 615-645 681-715 |
| IPR011990 | Tetratricopeptide-like helical | |||
| Molecular Function | GO:0005515 | protein binding | ||
| Gene3D | G3DSA:1.25.40.10 | no description | 1.4e-05 | 644-700 |
| no_ID | ||||
| HMMPanther | PTHR24015 | FAMILY | 0 | 89-851 |
| HMMPanther | PTHR24015:SF61 | PGR3 | 0 | 89-851 |
| HMMPfam | PF14432 | DYW_deaminase | 1.3e-15 | 729-841 |
| Seg | seg | seg | NA | 624-638 |
| superfamily | SSF48452 | TPR-like | 0.0034 | 540-698 |
| superfamily | SSF81901 | HCP-like | 0.0049 | 421-552 219-325 |
Lj1g3v0114220.1 chlo 4, nucl 2.5, chlo_mito 2.5, plas 2, vacu 2, cysk_nucl 2
| entry_id | prediction | score | sppta | spptna | fp | profile |
|---|---|---|---|---|---|---|
| Lj1g3v0114220.1 |