Miyakogusa Predicted Gene

Lj1g3v0114210.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JAQ9_SOYBN 773 68.5 80.6 (tr|I1JAQ9) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G22670.1 503 47.8 64.2 | Symbols: | Pentatricopeptide repeat (PPR) superfamily protein | chr3:8017771-8019459 REVERSE LENGTH=562
Medicago Medtr5g006640.1 738 66.8 78.0 | PPR containing plant-like protein | HC | chr5:1017001-1018791 | 20130731
Soybean Glyma01g44620.1 769 69.0 80.9  
LJGI gnl|LJGI|FS317514 1261 99.8 99.8 weakly similar to UniRef100_A7NWR8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (29%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0114210.1 length: 551 aa.
IPR002885 Pentatricopeptide repeat
method AccNumber shortName E-value location
HMMPfam PF01535 PPR 0.00048 273-302
483-512
HMMPfam PF12854 PPR_1 1.7e-06 371-403
HMMPfam PF13041 PPR_2 1.3e-13 304-351
410-458
HMMPfam PF13812 PPR_3 0.0057 168-196
203-234
HMMTigr TIGR00756 PPR: 0.0001 169-198
204-236
273-306
307-341
342-376
379-411
412-445
483-514
ProfileScan PS51375 PPR 11.356 166-196
201-235
270-304
236-266
305-339
340-374
375-409
410-444
445-479
480-514
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 8.8e-06 214-400
no_ID  
HMMPanther PTHR24015 FAMILY 1.2e-123 38-542
HMMPanther PTHR24015:SF0 SUBFAMILY 1.2e-123 38-542
Seg seg seg NA 452-469
Wolf-PSORT
Lj1g3v0114210.1	chlo 7, mito 3, nucl 2, cyto 2, cyto_nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0114210.1