Miyakogusa Predicted Gene
- Lj1g3v0112880.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I3S9R4_LOTJA |
450 |
100.0 |
100.0 |
(tr|I3S9R4) Uncharacterized protein OS=Lotus japonicus PE=2 SV=1 |
| TAIR_pep |
AT3G22845.1 |
363 |
79.0 |
89.7 |
| Symbols: | emp24/gp25L/p24 family/GOLD family protein | chr3:8087373-8088550 FORWARD LENGTH=214 |
| Medicago |
Medtr1g102720.1 |
392 |
88.4 |
91.2 |
| emp24/gp25L/p24 family protein | HC | chr1:46427897-46425652 | 20130731 |
| Soybean |
Glyma10g38880.1 |
397 |
90.8 |
94.7 |
|
| LJGI |
gnl|LJGI|TC58271 |
1291 |
100.0 |
100.0 |
similar to UniRef100_A7NWU4 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (91%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0112880.1 |
length: 215 aa. |
| IPR009038 |
GOLD |
| method |
AccNumber |
shortName |
E-value |
location |
| Biological Process |
GO:0006810 |
transport |
|
|
| Cellular Component |
GO:0016021 |
integral to membrane |
|
|
| HMMPfam |
PF01105 |
EMP24_GP25L |
7.9e-43 |
33-206 |
| ProfileScan |
PS50866 |
GOLD |
16.313 |
36-123 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
145-166 |
| HMMPanther |
PTHR22811 |
TRANSMEMBRANE |
1.2e-54 |
11-208 |
- Putative transmembrane regions
| |
From |
To |
TM segments
SOSUI |
7 |
29 |
- Wolf-PSORT
Lj1g3v0112880.1 cyto 4, E.R. 3, chlo 2, extr 2, E.R._vacu 2, cyto_pero 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0112880.1 |
|