Miyakogusa Predicted Gene

Lj1g3v0084900.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL B7FKU7_MEDTR 566 86.7 91.4 (tr|B7FKU7) Cysteine synthase OS=Medicago truncatula GN=MTR_5g006340 PE=2 SV=1

TAIR_pep AT4G14880.4 497 74.6 85.0 | Symbols: OASA1 | O-acetylserine (thiol) lyase (OAS-TL) isoform A1 | chr4:8518209-8520050 REVERSE LENGTH=322

Medicago Medtr5g006340.3 566 86.7 91.4 | O-acetylserine (thiol) lyase | HC | chr5:860691-865607 | 20130731

Soybean Glyma11g00810.3 566 87.0 90.7

LJGI gnl|LJGI|TC62606 1945 100.0 100.0 homologue to UniRef100_Q8W1A0 Cluster: Cysteine synthase; n=1; Glycine max|Rep: Cysteine synthase - Glycine max (Soybean), complete

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0084900.1 length: 325 aa.

IPR001216 Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site

method AccNumber shortName E-value location

Biological Process GO:0006535 cysteine biosynthetic process from serine

PatternScan PS00901 CYS_SYNTHASE NA 38-56

IPR001926 Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily

HMMPfam PF00291 PALP 2.6e-61 12-299

superfamily SSF53686 Tryptophan 3.4e-102 6-325

IPR005856 Cysteine synthase K/M

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01136 cysKM: 4e-136 13-311

IPR005859 Cysteine synthase A

Molecular Function GO:0004124 cysteine synthase activity

Biological Process GO:0006535 cysteine biosynthetic process from serine

HMMTigr TIGR01139 cysK: 5.9e-142 13-311

no_ID

Gene3D G3DSA:3.40.50.1100 no description 3.1e-82 44-140
141-313

HMMPanther PTHR10314 SER/THR 1.8e-187 4-321

HMMPanther PTHR10314:SF8 CYSTEINE 1.8e-187 4-321

Seg seg seg NA 182-193
275-285

Wolf-PSORT

Lj1g3v0084900.1 chlo 7, cyto 6

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0084900.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	B7FKU7_MEDTR	566	86.7	91.4	(tr\|B7FKU7) Cysteine synthase OS=Medicago truncatula GN=MTR_5g006340 PE=2 SV=1
TAIR_pep	AT4G14880.4	497	74.6	85.0	\| Symbols: OASA1 \| O-acetylserine (thiol) lyase (OAS-TL) isoform A1 \| chr4:8518209-8520050 REVERSE LENGTH=322
Medicago	Medtr5g006340.3	566	86.7	91.4	\| O-acetylserine (thiol) lyase \| HC \| chr5:860691-865607 \| 20130731
Soybean	Glyma11g00810.3	566	87.0	90.7
LJGI	gnl\|LJGI\|TC62606	1945	100.0	100.0	homologue to UniRef100_Q8W1A0 Cluster: Cysteine synthase; n=1; Glycine max\|Rep: Cysteine synthase - Glycine max (Soybean), complete

IPR001216	Cysteine synthase/cystathionine beta-synthase P-phosphate-binding site
Lj1g3v0084900.1				length: 325 aa.
method	AccNumber	shortName	E-value	location
Biological Process	GO:0006535	cysteine biosynthetic process from serine
PatternScan	PS00901	CYS_SYNTHASE	NA	38-56
IPR001926	Tryptophan synthase beta subunit-like PLP-dependent enzymes superfamily
HMMPfam	PF00291	PALP	2.6e-61	12-299
superfamily	SSF53686	Tryptophan	3.4e-102	6-325
IPR005856	Cysteine synthase K/M
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01136	cysKM:	4e-136	13-311
IPR005859	Cysteine synthase A
Molecular Function	GO:0004124	cysteine synthase activity
Biological Process	GO:0006535	cysteine biosynthetic process from serine
HMMTigr	TIGR01139	cysK:	5.9e-142	13-311
no_ID
Gene3D	G3DSA:3.40.50.1100	no description	3.1e-82	44-140 141-313
HMMPanther	PTHR10314	SER/THR	1.8e-187	4-321
HMMPanther	PTHR10314:SF8	CYSTEINE	1.8e-187	4-321
Seg	seg	seg	NA	182-193 275-285