Miyakogusa Predicted Gene

Lj1g3v0052650.1

Related links:

Predicted Sequence Links:

Genome Sequence: Lj3.0_chr1

Full length sequence(62285374 bp) Sequence Cut

Init: Term:
reverse complement

Results of Blast2 searches (The best-hits are tabulated.):

database Accession Score Iden
(%) Posi
(%) Definition

TrEMBL I1LFS4_SOYBN 1763 81.2 86.4 (tr|I1LFS4) Uncharacterized protein OS=Glycine max PE=4 SV=2

TAIR_pep AT3G06010.1 1423 68.0 79.0 | Symbols: ATCHR12 | Homeotic gene regulator | chr3:1802435-1807284 REVERSE LENGTH=1102

Medicago Medtr5g005840.1 1693 79.5 84.8 | chromatin remodeling factor, putative | HC | chr5:644652-653059 | 20130731

Soybean Glyma11g00640.1 1753 80.3 85.5

LJGI gnl|LJGI|TC68024 2296 98.9 98.9 similar to UniRef100_A7NWI8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

A list of protein families, domains and functional sites (searches in InterPro)

Lj1g3v0052650.1 length: 1072 aa.

IPR000330 SNF2-related

method AccNumber shortName E-value location

Molecular Function GO:0003677 DNA binding

Molecular Function GO:0005524 ATP binding

HMMPfam PF00176 SNF2_N 9e-86 380-669

IPR001650 Helicase, C-terminal

Molecular Function GO:0003676 nucleic acid binding

Molecular Function GO:0004386 helicase activity

Molecular Function GO:0005524 ATP binding

HMMPfam PF00271 Helicase_C 2.5e-16 722-801

HMMSmart SM00490 helicase 6.4e-26 717-801

ProfileScan PS51194 HELICASE_CTER 17.540 691-852

IPR014001 Helicase, superfamily 1/2, ATP-binding domain

HMMSmart SM00487 DEAD-like 4.2e-38 373-566

ProfileScan PS51192 HELICASE_ATP_BIND_1 23.210 389-555

IPR027417 P-loop containing nucleoside triphosphate hydrolase

superfamily SSF52540 P-loop 5.5e-69 322-602
604-859

no_ID

Gene3D G3DSA:3.40.50.300 no description 1.7e-25 362-552
678-829

HMMPanther PTHR10799 SWI/SNF-RELATED 9.3e-253 1-1018

Seg seg seg NA 34-59
272-290
307-322
805-823

Wolf-PSORT

Lj1g3v0052650.1 nucl 5, cyto 5, cyto_nucl 5

PTS1 (Peroxisome targeting signal type 1)

entry_id prediction score sppta spptna fp profile

Lj1g3v0052650.1

Top Kazusa DNA Research Institute

database	Accession	Score	Iden (%)	Posi (%)	Definition
TrEMBL	I1LFS4_SOYBN	1763	81.2	86.4	(tr\|I1LFS4) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep	AT3G06010.1	1423	68.0	79.0	\| Symbols: ATCHR12 \| Homeotic gene regulator \| chr3:1802435-1807284 REVERSE LENGTH=1102
Medicago	Medtr5g005840.1	1693	79.5	84.8	\| chromatin remodeling factor, putative \| HC \| chr5:644652-653059 \| 20130731
Soybean	Glyma11g00640.1	1753	80.3	85.5
LJGI	gnl\|LJGI\|TC68024	2296	98.9	98.9	similar to UniRef100_A7NWI8 Cluster: Chromosome chr5 scaffold_2, whole genome shotgun sequence; n=1; Vitis vinifera\|Rep: Chromosome chr5 scaffold_2, whole genome shotgun sequence - Vitis vinifera (Grape), partial (35%)

IPR000330	SNF2-related
Lj1g3v0052650.1				length: 1072 aa.
method	AccNumber	shortName	E-value	location
Molecular Function	GO:0003677	DNA binding
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00176	SNF2_N	9e-86	380-669
IPR001650	Helicase, C-terminal
Molecular Function	GO:0003676	nucleic acid binding
Molecular Function	GO:0004386	helicase activity
Molecular Function	GO:0005524	ATP binding
HMMPfam	PF00271	Helicase_C	2.5e-16	722-801
HMMSmart	SM00490	helicase	6.4e-26	717-801
ProfileScan	PS51194	HELICASE_CTER	17.540	691-852
IPR014001	Helicase, superfamily 1/2, ATP-binding domain
HMMSmart	SM00487	DEAD-like	4.2e-38	373-566
ProfileScan	PS51192	HELICASE_ATP_BIND_1	23.210	389-555
IPR027417	P-loop containing nucleoside triphosphate hydrolase
superfamily	SSF52540	P-loop	5.5e-69	322-602 604-859
no_ID
Gene3D	G3DSA:3.40.50.300	no description	1.7e-25	362-552 678-829
HMMPanther	PTHR10799	SWI/SNF-RELATED	9.3e-253	1-1018
Seg	seg	seg	NA	34-59 272-290 307-322 805-823