Miyakogusa Predicted Gene

Lj1g3v0052580.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL F6H7L4_VITVI 696 44.6 55.6 (tr|F6H7L4) Putative uncharacterized protein OS=Vitis vinifera GN=VIT_10s0116g00720 PE=4 SV=1
TAIR_pep AT4G04885.1 301 62.3 73.7 | Symbols: PCFS4 | PCF11P-similar protein 4 | chr4:2472083-2475417 FORWARD LENGTH=808
Medicago Medtr6g011450.1 955 61.2 69.2 | PCF11P-related protein | HC | chr6:3246456-3252804 | 20130731
Soybean Glyma20g28050.1 870 57.1 64.5  
LJGI gnl|LJGI|TC71174 1152 100.0 100.0 similar to UniRef100_A7QUM0 Cluster: Chromosome chr10 scaffold_179, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr10 scaffold_179, whole genome shotgun sequence - Vitis vinifera (Grape), partial (20%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0052580.1 length: 804 aa.
IPR006569 CID domain
method AccNumber shortName E-value location
HMMSmart SM00582 no description 4.1e-37 38-160
ProfileScan PS51391 CID 35.594 35-163
IPR006903 RNA polymerase II-binding domain
HMMPfam PF04818 CTD_bind 1e-07 91-145
IPR007087 Zinc finger, C2H2
Molecular Function GO:0008270 zinc ion binding    
PatternScan PS00028 ZINC_FINGER_C2H2_1 NA 638-658
IPR008942 ENTH/VHS
Gene3D G3DSA:1.25.40.90 no description 3.1e-38 36-162
superfamily SSF48464 ENTH/VHS 1.1e-37 32-168
no_ID  
HMMPanther PTHR15921 PRE-MRNA 1.5e-54 18-777
Seg seg seg NA 25-34
221-236
550-575
705-712
Wolf-PSORT
Lj1g3v0052580.1	nucl 14
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0052580.1