Miyakogusa Predicted Gene
- Lj1g3v0051020.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
B9SNC7_RICCO |
211 |
73.8 |
84.6 |
(tr|B9SNC7) Histone deacetylase hda2, putative OS=Ricinus communis GN=RCOM_0174810 PE=4 SV=1 |
| TAIR_pep |
AT2G14830.2 |
181 |
70.7 |
84.5 |
| Symbols: | Regulator of Vps4 activity in the MVB pathway protein | chr2:6362524-6363893 FORWARD LENGTH=146 |
| Medicago |
Medtr5g005150.2 |
209 |
79.0 |
88.7 |
| histone deacetylase | HC | chr5:261031-256169 | 20130731 |
| Soybean |
Glyma01g45400.1 |
182 |
79.8 |
86.8 |
|
| LJGI |
gnl|LJGI|AV428862 |
658 |
96.2 |
96.2 |
weakly similar to UniRef100_A7QL52 Cluster: Chromosome chr3 scaffold_117, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr3 scaffold_117, whole genome shotgun sequence - Vitis vinifera (Grape), partial (34%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0051020.1 |
length: 149 aa. |
| IPR000286 |
Histone deacetylase superfamily |
| method |
AccNumber |
shortName |
E-value |
location |
| HMMPanther |
PTHR10625 |
HISTONE |
9.8e-31 |
50-133 |
| IPR001607 |
Zinc finger, UBP-type |
| Molecular Function |
GO:0008270 |
zinc ion binding |
|
|
| HMMPfam |
PF02148 |
zf-UBP |
2.4e-17 |
52-110 |
| HMMSmart |
SM00290 |
Ubiquitin |
2.1e-07 |
51-100 |
| ProfileScan |
PS50271 |
ZF_UBP |
16.683 |
50-111 |
| IPR013083 |
Zinc finger, RING/FYVE/PHD-type |
| Gene3D |
G3DSA:3.30.40.10 |
no description |
1.8e-21 |
31-118 |
| no_ID |
|
| HMMPanther |
PTHR10625:SF25 |
HISTONE |
9.8e-31 |
50-133 |
| Seg |
seg |
seg |
NA |
3-9 |
- Wolf-PSORT
Lj1g3v0051020.1 nucl 8, chlo 2, extr 2, cyto 1, plas 1, chlo_mito 1, cyto_plas 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0051020.1 |
|