Miyakogusa Predicted Gene

Lj1g3v0047810.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1JB03_SOYBN 592 71.3 80.6 (tr|I1JB03) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT3G19440.1 448 55.7 69.9 | Symbols: | Pseudouridine synthase family protein | chr3:6740778-6743132 FORWARD LENGTH=477
Medicago Medtr5g004910.1 561 68.2 78.6 | RNA pseudouridine synthase | HC | chr5:186083-183651 | 20130731
Soybean Glyma01g45530.1 590 71.9 80.7  
LJGI gnl|LJGI|BW631256 918 99.8 99.8 similar to UniRef100_A9EHL2 Cluster: Ribosomal large subunit pseudouridine synthase C; n=2; Phaeobacter gallaeciensis|Rep: Ribosomal large subunit pseudouridine synthase C - Phaeobacter gallaeciensis 2.10, partial (6%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0047810.1 length: 429 aa.
IPR006145 Pseudouridine synthase, RsuA/RluB/C/D/E/F
method AccNumber shortName E-value location
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
HMMPfam PF00849 PseudoU_synth_2 5.4e-25 147-316
IPR020103 Pseudouridine synthase, catalytic domain
Biological Process GO:0001522 pseudouridine synthesis    
Molecular Function GO:0003723 RNA binding    
Biological Process GO:0009451 RNA modification    
Molecular Function GO:0009982 pseudouridine synthase activity    
superfamily SSF55120 Pseudouridine 1.9e-39 129-427
no_ID  
HMMPanther PTHR10436 RNA 1e-92 56-424
HMMPanther PTHR10436:SF42 RNA 1e-92 56-424
Seg seg seg NA 342-356
Wolf-PSORT
Lj1g3v0047810.1	mito 6.5, chlo 4, cyto_mito 4, nucl 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0047810.1