Miyakogusa Predicted Gene

Lj1g3v0013390.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K5N1_SOYBN 1316 82.9 88.6 (tr|K7K5N1) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT3G19210.1 1149 72.2 82.2 | Symbols: ATRAD54, CHR25, RAD54 | homolog of RAD54 | chr3:6652799-6658876 REVERSE LENGTH=910
Medicago Medtr5g004720.1 1293 81.5 86.8 | DNA repair and recombination RAD54-like protein | HC | chr5:103589-93910 | 20130731
Soybean Glyma01g45590.1 856 80.1 85.6  
LJGI gnl|LJGI|FS341673 58.0 100.0 100.0 similar to UniRef100_A7PLW2 Cluster: Chromosome chr14 scaffold_21, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr14 scaffold_21, whole genome shotgun sequence - Vitis vinifera (Grape), partial (12%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0013390.1 length: 796 aa.
IPR000330 SNF2-related
method AccNumber shortName E-value location
Molecular Function GO:0003677 DNA binding    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00176 SNF2_N 2.9e-67 166-472
IPR001650 Helicase, C-terminal
Molecular Function GO:0003676 nucleic acid binding    
Molecular Function GO:0004386 helicase activity    
Molecular Function GO:0005524 ATP binding    
HMMPfam PF00271 Helicase_C 1.1e-11 553-632
HMMSmart SM00490 helicase 1.8e-18 548-632
ProfileScan PS51194 HELICASE_CTER 16.096 521-679
IPR014001 Helicase, superfamily 1/2, ATP-binding domain
HMMSmart SM00487 DEAD-like 1.1e-31 159-362
ProfileScan PS51192 HELICASE_ATP_BIND_1 21.160 181-354
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 2e-71 152-404
405-796
no_ID  
Gene3D G3DSA:3.40.50.300 no description 1e-16 163-351
512-656
HMMPanther PTHR10799 SWI/SNF-RELATED 0 1-781
HMMPanther PTHR10799:SF300SUBFAMILY NOT 0 1-781
Seg seg seg NA 6-15
104-117
294-305
Wolf-PSORT
Lj1g3v0013390.1	nucl 11, cyto 1, vacu 1, cysk 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0013390.1 Not targeted -34.449 -0.952 -7.899 40.41% -25.599