Miyakogusa Predicted Gene
- Lj1g3v0003100.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr1
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
K7L7P5_SOYBN |
265 |
74.6 |
80.7 |
(tr|K7L7P5) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT1G51730.1 |
205 |
60.2 |
72.4 |
| Symbols: | Ubiquitin-conjugating enzyme family protein | chr1:19186812-19188638 REVERSE LENGTH=252 |
| Medicago |
Medtr8g015590.1 |
249 |
76.8 |
81.8 |
| ubiquitin-conjugating enzyme family protein | HC | chr8:5110857-5117897 | 20130731 |
| Soybean |
Glyma08g20940.1 |
263 |
74.6 |
80.7 |
|
| LJGI |
gnl|LJGI|TC69010 |
1063 |
99.8 |
99.8 |
similar to UniRef100_A7P6U8 Cluster: Chromosome chr9 scaffold_7, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr9 scaffold_7, whole genome shotgun sequence - Vitis vinifera (Grape), partial (84%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj1g3v0003100.1 |
length: 180 aa. |
| IPR006575 |
RWD domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF05773 |
RWD |
8.6e-21 |
3-120 |
| HMMSmart |
SM00591 |
no description |
2e-28 |
10-124 |
| ProfileScan |
PS50908 |
RWD |
21.937 |
10-124 |
| IPR016135 |
Ubiquitin-conjugating enzyme/RWD-like |
| Gene3D |
G3DSA:3.10.110.10 |
no description |
1.1e-31 |
1-125 |
| superfamily |
SSF54495 |
UBC-like |
1.1e-28 |
1-123 |
| no_ID |
|
| Coil |
coil |
coiled-coil |
NA |
5-26 |
| HMMPanther |
PTHR12292 |
RWD |
5.8e-57 |
1-178 |
| Seg |
seg |
seg |
NA |
158-175 |
- Wolf-PSORT
Lj1g3v0003100.1 nucl 4.5, nucl_plas 4.5, cyto 4, plas 3.5, chlo 2, cyto_pero 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj1g3v0003100.1 |
Not targeted |
-38.984 |
-1.171 |
-3.389 |
51.00% |
-34.423
|