Miyakogusa Predicted Gene

Lj1g3v0001050.2
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr1
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7K5N8_SOYBN 1673 79.7 87.7 (tr|K7K5N8) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G76630.2 1056 53.6 70.2 | Symbols: | Tetratricopeptide repeat (TPR)-like superfamily protein | chr1:28759699-28765042 FORWARD LENGTH=1168
Medicago Medtr5g004660.1 1619 78.5 86.1 | superkiller-like protein | HC | chr5:57937-73020 | 20130731
Soybean Glyma01g45670.1 1572 76.1 83.8  
LJGI gnl|LJGI|TC57658 787 99.3 99.3 weakly similar to UniRef100_A7QPJ9 Cluster: Chromosome chr18 scaffold_137, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr18 scaffold_137, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj1g3v0001050.2 length: 1029 aa.
IPR001440 Tetratricopeptide TPR-1
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00515 TPR_1 0.0064 83-99
IPR011990 Tetratricopeptide-like helical
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:1.25.40.10 no description 9.6e-05 14-241
414-633
833-969
IPR013026 Tetratricopeptide repeat-containing domain
Molecular Function GO:0005515 protein binding    
ProfileScan PS50293 TPR_REGION 9.395 1-235
427-460
IPR013105 Tetratricopeptide TPR2
HMMPfam PF07719 TPR_2 8e-05 427-459
IPR019734 Tetratricopeptide repeat
Molecular Function GO:0005515 protein binding    
HMMSmart SM00028 Tetratricopeptide 0.011 26-64
65-99
134-167
168-201
202-235
427-460
ProfileScan PS50005 TPR 9.853 66-99
134-167
168-201
202-235
427-460
no_ID  
HMMPanther PTHR23083 TETRATRICOPEPTIDE 7.1e-197 13-790
HMMPanther PTHR23083:SF160PUTATIVE UNCHARACTERIZED 7.1e-197 13-790
HMMPfam PF13414 TPR_11 9.4e-11 136-198
Seg seg seg NA 39-52
757-775
superfamily SSF48452 TPR-like 5.9e-10 4-241
523-776
360-558
Putative transmembrane regions
  From To
TM segments
SOSUI		 649 671
Wolf-PSORT
Lj1g3v0001050.2	cyto 5, nucl 4, E.R. 2, cysk_nucl 2, nucl_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj1g3v0001050.2