Miyakogusa Predicted Gene

Lj0g3v0362529.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL K7LQ96_SOYBN 1439 86.4 91.6 (tr|K7LQ96) Uncharacterized protein OS=Glycine max PE=4 SV=1
TAIR_pep AT1G08190.1 1263 78.9 89.3 | Symbols: ATVPS41, ZIP2, VPS41, ATVAM2, VAM2 | vacuolar protein sorting 41 | chr1:2567652-2573142 FORWARD LENGTH=980
Medicago Medtr4g056480.1 1404 83.9 90.3 | vacuolar protein sorting protein | HC | chr4:20713510-20696458 | 20130731
Soybean Glyma11g19660.1 1439 86.4 91.6  
LJGI gnl|LJGI|TC67130 321 84.3 84.3 similar to UniRef100_A7PQN0 Cluster: Chromosome chr6 scaffold_25, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr6 scaffold_25, whole genome shotgun sequence - Vitis vinifera (Grape), partial (19%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0362529.1 length: 796 aa.
IPR000547 Clathrin, heavy chain/VPS, 7-fold repeat
method AccNumber shortName E-value location
Biological Process GO:0006886 intracellular protein transport    
Biological Process GO:0016192 vesicle-mediated transport    
HMMPfam PF00637 Clathrin 3.4e-21 611-754
HMMSmart SM00299 Clathrin 7e-37 611-758
IPR001680 WD40 repeat
Molecular Function GO:0005515 protein binding    
HMMPfam PF00400 WD40 2.3e-05 87-122
HMMSmart SM00320 WD40 2.1e+02 85-124
173-209
IPR015943 WD40/YVTN repeat-like-containing domain
Molecular Function GO:0005515 protein binding    
Gene3D G3DSA:2.130.10.10 no description 9.3e-16 20-261
IPR016902 Vacuolar protein sorting-associated protein 41
HMMPIR PIRSF028921 Vacuolar 0 1-796
no_ID  
Coil coil coiled-coil NA 16-37
HMMPanther PTHR12616 VACUOLAR 3.9e-270 1-796
HMMPanther PTHR12616:SF0 SUBFAMILY 3.9e-270 1-796
Seg seg seg NA 10-39
superfamily SSF101908 Putative 1.7e-19 67-264
Wolf-PSORT
Lj0g3v0362529.1	cyto 9, nucl 3, plas 1, E.R._vacu 1
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0362529.1