Miyakogusa Predicted Gene
- Lj0g3v0359789.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
C6TNJ7_SOYBN |
147 |
89.5 |
93.4 |
(tr|C6TNJ7) Putative uncharacterized protein (Fragment) OS=Glycine max PE=2 SV=1 |
| TAIR_pep |
AT4G00830.4 |
123 |
73.3 |
86.7 |
| Symbols: | RNA-binding (RRM/RBD/RNP motifs) family protein | chr4:352782-354965 FORWARD LENGTH=495 |
| Medicago |
Medtr7g118120.1 |
128 |
78.7 |
86.7 |
| RNA recognition motif, a.k.a. RRM, RBD protein | HC | chr7:49025533-49031900 | 20130731 |
| Soybean |
Glyma03g42150.2 |
147 |
89.5 |
93.4 |
|
| LJGI |
gnl|LJGI|TC58721 |
678 |
99.7 |
99.7 |
similar to UniRef100_Q2HTD6 Cluster: RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF- hand; n=1; Medicago truncatula|Rep: RNA-binding region RNP-1 (RNA recognition motif); Calcium-binding EF- hand - Medicago truncatula (Barrel medic), partial (13%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0359789.1 |
length: 115 aa. |
| IPR000504 |
RNA recognition motif domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003676 |
nucleic acid binding |
|
|
| HMMPfam |
PF00076 |
RRM_1 |
4.6e-05 |
37-90 |
| IPR012677 |
Nucleotide-binding, alpha-beta plait |
| Molecular Function |
GO:0000166 |
nucleotide binding |
|
|
| Gene3D |
G3DSA:3.30.70.330 |
no description |
1.7e-06 |
40-105 |
| no_ID |
|
| HMMPanther |
PTHR24011 |
FAMILY |
1.4e-25 |
39-112 |
| HMMPanther |
PTHR24011:SF134SUBFAMILY |
NOT |
1.4e-25 |
39-112 |
| Seg |
seg |
seg |
NA |
27-38 |
| superfamily |
SSF54928 |
RNA-binding |
1.2e-07 |
28-110 |
- Wolf-PSORT
Lj0g3v0359789.1 chlo 8, extr 3, nucl 1, cyto 1, pero 1, cyto_nucl 1, cyto_pero 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0359789.1 |
|