Miyakogusa Predicted Gene

Lj0g3v0359279.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1MP88_SOYBN 355 39.5 45.7 (tr|I1MP88) Uncharacterized protein OS=Glycine max PE=4 SV=2
TAIR_pep AT1G45616.1 114 46.8 59.5 | Symbols: AtRLP6, RLP6 | receptor like protein 6 | chr1:17183550-17186534 REVERSE LENGTH=994
Medicago Medtr5g096340.1 300 37.4 44.0 | receptor-like protein | LC | chr5:42125915-42122699 | 20130731
Soybean Glyma16g28480.1 281 35.4 42.1  
LJGI gnl|LJGI|DC598178 1102 99.5 99.5 weakly similar to UniRef100_A7QK47 Cluster: Chromosome chr16 scaffold_110, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome chr16 scaffold_110, whole genome shotgun sequence - Vitis vinifera (Grape), partial (13%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0359279.1 length: 602 aa.
IPR001611 Leucine-rich repeat
method AccNumber shortName E-value location
Molecular Function GO:0005515 protein binding    
HMMPfam PF00560 LRR_1 0.11 239-256
384-404
IPR003591 Leucine-rich repeat, typical subtype
HMMSmart SM00369 Leucine-rich 13 115-140
164-190
237-258
310-334
358-381
382-406
430-454
565-589
IPR013210 Leucine-rich repeat-containing N-terminal, type 2
HMMPfam PF08263 LRRNT_2 6.8e-11 32-86
no_ID  
FPrintScan PR00019 LEURICHRPT 5.8e-06 313-326
565-578
Gene3D G3DSA:3.80.10.10 no description 0.00024 69-195
196-338
339-549
550-601
HMMPanther PTHR24420 FAMILY 4.8e-92 96-602
HMMPfam PF13516 LRR_6 0.033 565-588
HMMPfam PF13855 LRR_8 1.5e-07 311-370
HMMSmart SM00365 Leucine-rich 30 164-193
334-360
406-432
565-591
Seg seg seg NA 4-32
162-173
205-216
251-271
282-303
304-324
351-367
380-391
484-503
513-527
535-555
superfamily SSF52047 RNI-like 8.7e-54 302-602
superfamily SSF52058 L 9.8e-50 28-328
Putative transmembrane regions
  From To
TM segments
SOSUI		 1 22
Wolf-PSORT
Lj0g3v0359279.1	extr 5, plas 4, E.R. 2, golg_plas 2, cysk_plas 2, mito_plas 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0359279.1