Miyakogusa Predicted Gene
- Lj0g3v0359119.2
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1LQY7_SOYBN |
407 |
80.0 |
86.9 |
(tr|I1LQY7) Uncharacterized protein OS=Glycine max PE=4 SV=2 |
| TAIR_pep |
AT5G60450.1 |
199 |
46.9 |
58.3 |
| Symbols: ARF4 | auxin response factor 4 | chr5:24308558-24312187 REVERSE LENGTH=788 |
| Medicago |
Medtr4g060460.1 |
350 |
72.2 |
77.8 |
| auxin response factor-like protein | HC | chr4:22234433-22239989 | 20130731 |
| Soybean |
Glyma12g29280.3 |
361 |
71.9 |
79.8 |
|
| LJGI |
gnl|LJGI|FS350751 |
646 |
100.0 |
100.0 |
similar to UniRef100_Q2HSV9 Cluster: Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation; n=1; Medicago truncatula|Rep: Transcriptional factor B3; Auxin response factor; Aux/IAA_ARF_dimerisation - Medicago truncatula (Barrel medic), partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0359119.2 |
length: 245 aa. |
| IPR003311 |
AUX/IAA protein |
| method |
AccNumber |
shortName |
E-value |
location |
| Cellular Component |
GO:0005634 |
nucleus |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02309 |
AUX_IAA |
1.3e-22 |
157-244 |
| IPR011525 |
Aux/IAA-ARF-dimerisation |
| Molecular Function |
GO:0046983 |
protein dimerization activity |
|
|
| ProfileScan |
PS50962 |
IAA_ARF |
28.724 |
163-245 |
| no_ID |
|
| HMMPanther |
PTHR31384 |
FAMILY |
7.9e-27 |
153-245 |
| superfamily |
SSF54277 |
CAD |
5.4e-11 |
150-242 |
- Wolf-PSORT
Lj0g3v0359119.2 nucl 6, cyto 4, extr 2, cyto_pero 2, cyto_E.R. 2, cyto_plas 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0359119.2 |
|