Miyakogusa Predicted Gene

Lj0g3v0358309.1
Related links:
Predicted Sequence Links:
Genome Sequence: Lj3.0_chr0
Results of Blast2 searches (The best-hits are tabulated.):
database Accession Score Iden
(%)		 Posi
(%)		 Definition
TrEMBL I1M0W9_SOYBN 1115 85.5 90.8 (tr|I1M0W9) Structural maintenance of chromosomes protein OS=Glycine max PE=3 SV=2
TAIR_pep AT5G62410.1 918 72.1 82.8 | Symbols: SMC2, TTN3, ATCAP-E1, ATSMC4 | structural maintenance of chromosomes 2 | chr5:25056308-25062436 FORWARD LENGTH=1175
Medicago Medtr8g037325.1 1120 86.0 91.6 | structural maintenance of chromosomes protein | HC | chr8:13910705-13922893 | 20130731
Soybean Glyma13g27210.1 1077 83.3 88.8  
LJGI gnl|LJGI|TC75352 1174 100.0 100.0 homologue to UniRef100_A7Q542 Cluster: Chromosome undetermined scaffold_51, whole genome shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome undetermined scaffold_51, whole genome shotgun sequence - Vitis vinifera (Grape), partial (17%)
A list of protein families, domains and functional sites (searches in InterPro)
Lj0g3v0358309.1 length: 641 aa.
IPR003395 RecF/RecN/SMC
method AccNumber shortName E-value location
HMMPfam PF02463 SMC_N 1.1e-29 308-626
IPR010935 SMCs flexible hinge
Molecular Function GO:0005515 protein binding    
Molecular Function GO:0005524 ATP binding    
Cellular Component GO:0005694 chromosome    
Biological Process GO:0051276 chromosome organization    
HMMPfam PF06470 SMC_hinge 2.1e-18 2-103
HMMSmart SM00968 SMC 1.6e-15 2-103
superfamily SSF75553 Smc 1.6e-34 2-152
IPR027120 Structural maintenance of chromosomes Smc2
Cellular Component GO:0000796 condensin complex    
Biological Process GO:0007076 mitotic chromosome condensation    
HMMPanther PTHR18937:SF9 STRUCTURAL 5.7e-286 1-641
IPR027417 P-loop containing nucleoside triphosphate hydrolase
superfamily SSF52540 P-loop 3.4e-33 135-631
no_ID  
Coil coil coiled-coil NA 137-165
201-229
247-275
282-394
447-492
Gene3D G3DSA:3.40.50.300 no description 2.9e-24 486-632
HMMPanther PTHR18937 STRUCTURAL 5.7e-286 1-641
Seg seg seg NA 45-56
554-566
Putative transmembrane regions
  From To
TM segments
SOSUI		 549 571
Wolf-PSORT
Lj0g3v0358309.1	nucl 5, cyto 3, nucl_plas 3, vacu 2, golg 2, cyto_plas 2
PTS1 (Peroxisome targeting signal type 1)
entry_id prediction score sppta spptna fp profile
Lj0g3v0358309.1