Miyakogusa Predicted Gene
- Lj0g3v0354469.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
I1KIB6_SOYBN |
508 |
69.6 |
79.0 |
(tr|I1KIB6) Uncharacterized protein OS=Glycine max PE=4 SV=1 |
| TAIR_pep |
AT3G61350.1 |
332 |
50.0 |
62.3 |
| Symbols: SKIP4 | SKP1 interacting partner 4 | chr3:22703203-22704374 FORWARD LENGTH=358 |
| Medicago |
Medtr8g030940.1 |
562 |
75.8 |
84.3 |
| SKP1 interacting partner 4 | HC | chr8:11537172-11533774 | 20130731 |
| Soybean |
Glyma07g07780.1 |
508 |
69.6 |
79.0 |
|
| LJGI |
gnl|LJGI|TC64843 |
2091 |
99.3 |
99.3 |
weakly similar to UniRef100_A7PZF0 Cluster: Chromosome chr15 scaffold_40, whole genome shotgun sequence; n=2; Vitis vinifera|Rep: Chromosome chr15 scaffold_40, whole genome shotgun sequence - Vitis vinifera (Grape), partial (81%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0354469.1 |
length: 359 aa. |
| IPR001810 |
F-box domain, cyclin-like |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| superfamily |
SSF81383 |
F-box |
8.4e-06 |
15-62 |
| IPR006652 |
Kelch repeat type 1 |
| Molecular Function |
GO:0005515 |
protein binding |
|
|
| HMMPfam |
PF01344 |
Kelch_1 |
1.8e-07 |
163-202 |
| IPR015916 |
Galactose oxidase, beta-propeller |
| Gene3D |
G3DSA:2.130.10.80 |
no description |
1.3e-27 |
50-317 |
| no_ID |
|
| HMMPanther |
PTHR26379 |
FAMILY |
1.4e-26 |
18-246 |
| HMMPanther |
PTHR26379:SF0 |
SUBFAMILY |
1.4e-26 |
18-246 |
| Seg |
seg |
seg |
NA |
323-336 |
| superfamily |
SSF117281 |
Kelch |
2.7e-36 |
75-317 |
- Wolf-PSORT
Lj0g3v0354469.1 nucl 6.5, cyto_nucl 5.5, cyto 3.5, chlo 1, extr 1, E.R. 1, cysk 1
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0354469.1 |
|