Miyakogusa Predicted Gene
- Lj0g3v0354159.1
- Related links:
- Predicted Sequence Links:
- Genome Sequence: Lj3.0_chr0
- Results of Blast2 searches (The best-hits are tabulated.):
| database |
Accession |
Score |
Iden
(%) |
Posi
(%) |
Definition |
|---|
| TrEMBL |
G7IAW3_MEDTR |
93.2 |
54.3 |
69.1 |
(tr|G7IAW3) 60S ribosomal protein L7 OS=Medicago truncatula GN=MTR_1g108780 PE=4 SV=1 |
| TAIR_pep |
AT3G18990.1 |
62.4 |
41.0 |
56.4 |
| Symbols: VRN1, REM39 | AP2/B3-like transcriptional factor family protein | chr3:6549077-6551568 REVERSE LENGTH=341 |
| Medicago |
Medtr1g108780.1 |
93.6 |
55.0 |
70.0 |
| transcriptional factor B3 family protein | HC | chr1:49164002-49166141 | 20130731 |
| Soybean |
Glyma20g24270.1 |
63.2 |
40.3 |
61.0 |
|
| LJGI |
gnl|LJGI|TC78770 |
440 |
96.8 |
96.8 |
weakly similar to UniRef100_A9SGA4 Cluster: Predicted protein; n=1; Physcomitrella patens subsp. patens|Rep: Predicted protein - Physcomitrella patens subsp. patens, partial (17%) |
- A list of protein families, domains and functional sites (searches in InterPro)
| Lj0g3v0354159.1 |
length: 83 aa. |
| IPR003340 |
B3 DNA binding domain |
| method |
AccNumber |
shortName |
E-value |
location |
| Molecular Function |
GO:0003677 |
DNA binding |
|
|
| Biological Process |
GO:0006355 |
regulation of transcription, DNA-dependent |
|
|
| HMMPfam |
PF02362 |
B3 |
3.4e-12 |
3-81 |
| HMMSmart |
SM01019 |
B3 |
0.0018 |
1-83 |
| ProfileScan |
PS50863 |
B3 |
12.323 |
1-83 |
| IPR015300 |
DNA-binding pseudobarrel domain |
| Gene3D |
G3DSA:2.40.330.10 |
no description |
7.5e-16 |
2-81 |
| superfamily |
SSF101936 |
DNA-binding |
8.6e-13 |
3-81 |
- Wolf-PSORT
Lj0g3v0354159.1 nucl 4, cyto 4, cyto_nucl 4, mito 2, cyto_pero 2, cyto_E.R. 2
- PTS1 (Peroxisome targeting signal type 1)
| entry_id |
prediction |
score |
sppta |
spptna |
fp |
profile |
| Lj0g3v0354159.1 |
|